Volume 6, Number 1, March 2005

• 
  Russ B. Altman: Editorial: Annual progress in bioinformatics. 4-5
• 
  Serafim Batzoglou: The many faces of sequence alignment. 6-22
• 
  Christopher Lee, Qi Wang: Bioinformatics analysis of alternative splicing. 23-33
• 
  Olga G. Troyanskaya: Putting microarrays in a context: Integrated analysis of diverse biological data. 34-43
• 
  Sean D. Mooney: Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis. 44-56
• 
  Aaron M. Cohen, William R. Hersh: A survey of current work in biomedical text mining. 57-71
• 
  Peter Bengert, Thomas Dandekar: Current efforts in the analysis of RNAi and RNAi target genes. 72-85
• 
  David P. Kreil, Roslin Russell: There is no silver bullet - a guide to low-level data transforms and normalisation methods for microarray data. 86-97

Volume 6, Number 2, June 2005

• 
  Martin J. Bishop: Editorial. 117
• 
  Igor B. Rogozin, Alexander V. Sverdlov, Vladimir N. Babenko, Eugene V. Koonin: Analysis of evolution of exon-intron structure of eukaryotic genes. 118-134
• 
  Rudi Alberts, Jingyuan Fu, Morris A. Swertz, L. Alrik Lubbers, Casper J. Albers, Ritsert C. Jansen: Combining microarrays and genetic analysis. 135-145
• 
  Ravi Sachidanandam: RNAi as a bioinformatics consumer. 146-162
• 
  Hendrik Fuß, Werner Dubitzky, C. Stephen Downes, Mary Jo Kurth: Mathematical models of cell cycle regulation. 163-177
• 
  Pieter B. T. Neerincx, Jack A. M. Leunissen: Evolution of web services in bioinformatics. 178-188
• 
  Jane Loveland: VEGA, the genome browser with a difference. 189-193
• 
  Don Gilbert: Biomolecular Interaction Network Database. 194-198

Volume 6, Number 3, September 2005

• 
  Jacob Koehler: Editorial. 220-221
• 
  Hagit Shatkay: Hairpins in bookstacks: Information retrieval from biomedical text. 222-238
• 
  Irena Spasic, Sophia Ananiadou, John McNaught, Anand Kumar: Text mining and ontologies in biomedicine: Making sense of raw text. 239-251
• 
  Sougata Mukherjea: Information retrieval and knowledge discovery utilising a biomedical Semantic Web. 252-262
• 
  Andre Skusa, Alexander Rüegg, Jacob Köhler: Extraction of biological interaction networks from scientific literature. 263-276
• 
  Marc Weeber, Jan A. Kors, Barend Mons: Online tools to support literature-based discovery in the life sciences. 277-286
• 
  Matthias Scherf, Anton Epple, Thomas Werner: The next generation of literature analysis: Integration of genomic analysis into text mining. 287-297
• 
  Get ready to GO! A biologist's guide to the Gene Ontology. 298-304

Volume 6, Number 4, 2005

• 
  Martin J. Bishop: Editorial. 317

• 
  Colin D. Meiklejohn, Jeffrey P. Townsend: A Bayesian method for analysing spotted microarray data. 318-330
• 
  Paul C. Boutros, Allan B. Okey: Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data. 331-343
• 
  William R. Hersh: Evaluation of biomedical text-mining systems: Lessons learned from information retrieval. 344-356
• 
  Ulf Leser, Jörg Hakenberg: What makes a gene name? Named entity recognition in the biomedical literature. 357-369
• 
  John W. Keele, James E. Wray: Software agents in molecular computational biology. 370-379
• 
  Gregory W. Carter: Inferring network interactions within a cell. 380-389

• 
  Paulo A. S. Nuin: WinPop 2.5: Software for representing population genetics phenomena. 390-393

• 
  Zuofeng Li, Li Wang, Yang Zhong: Detecting horizontal gene transfer with T-REX and RHOM programs. 394-401

• 
  I. King Jordan: Abstracts. 402-410

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