Briefings in Bioinformatics, Volume 2

Volume 2, Number 1, March 2001

• Rolf Apweiler:
  Functional Information in SWISS-PROT: the Basis for Large-scale Characterisation of Protein Sequences. 9-18
  
• Chris P. Ponting:
  Issues in Predicting Protein Function From Sequence. 19-29
  
• Arnaud Chatonnet, Xavier Cousin, Alan J. Robinson:
  Links Between Kinetic Data and Sequences in the Alpha/beta-hydrolases Fold Database. 30-37
  
• Bernard Jacq:
  Protein Function From the Perspective of Molecular Interactions and Genetic Networks. 38-50
  
• Marco Pagni, C. Victor Jongeneel:
  Making Sense of Score Statistics for Sequence Alignments. 51-67
  
• Robert L. Scot Drysdale:
  Phenotypic Data in FlyBase. 68-80
  
• Jacques van Helden, Avi Naim, Christian Lemer, Renato Mancuso, Matthew Eldridge, Shoshana J. Wodak:
  From Molecular Activities and Processes to Biological Function. 81-107
  

Volume 2, Number 2, May 2001

• David T. Jones:
  Protein Structure Prediction in Genomics. 111-125
  
• Ulrike Wittig, Ann De Beuckelaer:
  Analysis and Comparison of Metabolic Pathway Databases. 126-142
  
• Margaret Gardiner-Garden, Timothy G. Littlejohn:
  A Comparison of Microarray Databases. 143-158
  
• Richard A. Baldock, Jonathan Bard, Roberto Brunelli, Bill Hill, Matthew Kaufman, Kristie Opstad, David Smith, Margaret Stark, Andrew M. Waterhouse, Yiya Yang, Duncan Davidson:
  The Edinburgh Mouse Atlas: Using the CD. 159-169
  
• Martin Hrabé de Angelis, Mark Strivens:
  Large-scale Production of Mouse Phenotypes: the Search for Animal Models for Inherited M. Diseases in Humans. 170-180
  
• Oswaldo Trelles:
  On the Parallelisation of Bioinformatics Applications. 181-219
  

Volume 2, Number 3, September 2001

• Stephen Baigent:
  Editorial: Modelling Cell Systems - The Post-genomic Challenge. 221-222
  

• Nick S. Juty, Hugh D. Spence, Hans R. Hotz, Haizhou Tang, Igor Goryanin, T. Charles Hodgman:
  Simultaneous Modelling of Metabolic, Genetic and Product-interaction Networks. 223-232
  
• Mark R. Boyett, Arun V. Holden, Henggui Zhang:
  Engineering Virtual Cardiac Tissue. 233-244
  
• Andrew Yates, C. C. W. Chan, R. E. Callard, Andrew J. T. George, Jaroslav Stark:
  An Approach to Modelling in Immunology. 245-257
  
• Olaf Wolkenhauer:
  Systems Biology: the Reincarnation of Systems Theory Applied in Biology?. 258-270
  
• Mike Holcombe:
  Computational Models of Cells and Tissues: Machines, Agents and Fungal Infection. 271-278
  
• Sylvia B. Nagl:
  Can Correlated Mutations in Protein Domain Families Be Used for Protein Design? 279-288
  
• Jonathan Bard, Robin Winter:
  Ontologies of Developmental Anatomy: Their Current and Future Roles. 289-299
  
• Stephen Baigent:
  Gepasi 3.0. 300-315
  

Volume 2, Number 4, December 2001

• Paul T. Spellman:
  Editorial: The Future of Publishing Microarray Data. 316-318
  

• Jason E. Stewart, Harry Mangalam, Jiaye Zhou:
  Open Source Software Meets Gene Expression. 319-328
  
• Stefan Tomiuk, Kay Hofmann:
  Microarray Probe Selection Strategies. 329-349
  
• Yee Hwa Yang, Michael J. Buckley, Terence P. Speed:
  Analysis of CDNA Microarray Images. 341-349
  
• Gavin Sherlock:
  Analysis of Large-scale Gene Expression Data. 350-362
  
• Edward M. Marcotte, Shailesh V. Date:
  Exploiting Big Biology: Integrating Large-scale Biological Data for Function Inference. 363-374
  
• Sarah Ennis, Nikolas Maniatis, Andrew Collins:
  Allelic Association and Disease Mapping. 375-404
  
• Giulio Pavesi, Giancarlo Mauri, Graziano Pesole: Methods for Pattern Discovery in Unaligned Biological Sequences. 417

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