Helen E. Parkinson

	2012
26		Vincent Xue, Tony Burdett, Margus Lukk, Julie Taylor, Alvis Brazma, Helen E. Parkinson: MageComet - web application for harmonizing existing large-scale experiment descriptions. Bioinformatics 28(10): 1402-1403 (2012)
25		Misha Kapushesky, Tomasz Adamusiak, Tony Burdett, Aedín C. Culhane, Anna Farne, Alexey Filippov, Ele Holloway, Andrey Klebanov, Nataliya Kryvych, Natalja Kurbatova, Pavel Kurnosov, James Malone, Olga Melnichuk, Robert Petryszak, Nikolay Pultsin, Gabriella Rustici, Andrew Tikhonov, Ravensara S. Travillian, Eleanor Williams, Andrey Zorin, Helen E. Parkinson, Alvis Brazma: Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Research 40(Database-Issue): 1077-1081 (2012)
24		Mikhail Gostev, Adam Faulconbridge, Marco Brandizi, Julio Fernandez-Banet, Ugis Sarkans, Alvis Brazma, Helen E. Parkinson: The BioSample Database (BioSD) at the European Bioinformatics Institute. Nucleic Acids Research 40(Database-Issue): 64-70 (2012)
	2011
23		Sirarat Sarntivijai, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Brian D. Athey, Yongqun He: Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid Integrative Translational Informatics. ICBO 2011
22		Chao Pang, Tomasz Adamusiak, Helen E. Parkinson, James Malone: Rapid Development of an Ontology of Coriell Cell Lines. ICBO 2011
21		Ravensara S. Travillian, James Malone, Chao Pang, John M. Hancock, Peter W. H. Holland, Paul N. Schofield, Helen E. Parkinson: The Vertebrate Bridging Ontology (VBO). ICBO 2011
20		Tomasz Adamusiak, Tony Burdett, Natalja Kurbatova, K. Joeri van der Velde, Niran Abeygunawardena, Despoina Antonakaki, Misha Kapushesky, Helen E. Parkinson, Morris A. Swertz: OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript. BMC Bioinformatics 12: 218 (2011)
19		Helen E. Parkinson, Ugis Sarkans, Nikolay Kolesnikov, Niran Abeygunawardena, Tony Burdett, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Emma Hastings, Ele Holloway, Natalja Kurbatova, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Gabriella Rustici, Anjan Sharma, Eleanor Williams, Tomasz Adamusiak, Marco Brandizi, Nataliya Sklyar, Alvis Brazma: ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Research 39(Database-Issue): 1002-1004 (2011)
	2010
18		Ravi Shankar, Helen E. Parkinson, Tony Burdett, Emma Hastings, Junmin Liu, Michael Miller, Rashmi Srinivasa, Joseph White, Alvis Brazma, Gavin Sherlock, Christian J. Stoeckert Jr., Catherine A. Ball: Annotare - a tool for annotating high-throughput biomedical investigations and resulting data. Bioinformatics 26(19): 2470-2471 (2010)
17		James Malone, Ele Holloway, Tomasz Adamusiak, Misha Kapushesky, Jie Zheng, Nikolay Kolesnikov, Anna Zhukova, Alvis Brazma, Helen E. Parkinson: Modeling sample variables with an Experimental Factor Ontology. Bioinformatics 26(8): 1112-1118 (2010)
16		Misha Kapushesky, Ibrahim Emam, Ele Holloway, Pavel Kurnosov, Andrey Zorin, James Malone, Gabriella Rustici, Eleanor Williams, Helen E. Parkinson, Alvis Brazma: Gene Expression Atlas at the European Bioinformatics Institute. Nucleic Acids Research 38(Database-Issue): 690-698 (2010)
	2009
15		James Malone, Tomasz Adamusiak, Ele Holloway, Misha Kapushesky, Helen E. Parkinson: Developing an Ontology from the Application Up. OWLED 2009
14		Audrey Kauffmann, Tim F. Rayner, Helen E. Parkinson, Misha Kapushesky, Margus Lukk, Alvis Brazma, Wolfgang Huber: Importing ArrayExpress datasets into R/Bioconductor. Bioinformatics 25(16): 2092-2094 (2009)
13		Tim F. Rayner, Faisal Ibne Rezwan, Margus Lukk, Xiangqun Zheng Bradley, Anna Farne, Ele Holloway, James Malone, Eleanor Williams, Helen E. Parkinson: MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB. Bioinformatics 25(2): 279-280 (2009)
12		Helen E. Parkinson, Misha Kapushesky, Nikolay Kolesnikov, Gabriella Rustici, Mohammadreza Shojatalab, Niran Abeygunawardena, Hugo Berube, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Ele Holloway, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Tim F. Rayner, Faisal Ibne Rezwan, Anjan Sharma, Eleanor Williams, Xiangqun Zheng Bradley, Tomasz Adamusiak, Marco Brandizi, Tony Burdett, Richard Coulson, Maria Krestyaninova, Pavel Kurnosov, Eamonn Maguire, Sudeshna Guha Neogi, Philippe Rocca-Serra, Susanna-Assunta Sansone, Nataliya Sklyar, Mengyao Zhao, Ugis Sarkans, Alvis Brazma: ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Research 37(Database-Issue): 868-872 (2009)
	2007
11		Helen E. Parkinson, Misha Kapushesky, Mohammadreza Shojatalab, Niran Abeygunawardena, Richard Coulson, Anna Farne, Ele Holloway, N. Kolesnykov, P. Lilja, Margus Lukk, Roby Mani, Tim F. Rayner, Anjan Sharma, E. William, Ugis Sarkans, Alvis Brazma: ArrayExpress - a public database of microarray experiments and gene expression profiles. Nucleic Acids Research 35(Database-Issue): 747-750 (2007)
	2006
10		Tim F. Rayner, Philippe Rocca-Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert Jr., Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen E. Parkinson, Ugis Sarkans, Catherine A. Ball, Alvis Brazma: A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics 7: 489 (2006)
9		Patricia L. Whetzel, Helen E. Parkinson, Helen C. Causton, Liju Fan, Jennifer Fostel, Gilberto Fragoso, Laurence Game, Mervi Heiskanen, Norman Morrison, Philippe Rocca-Serra, Susanna-Assunta Sansone, Chris J. Taylor, Joseph White, Christian J. Stoeckert Jr.: The MGED Ontology: a resource for semantics-based description of microarray experiments. Bioinformatics 22(7): 866-873 (2006)
	2005
8		Kevin L. Garwood, Phillip W. Lord, Helen E. Parkinson, Norman W. Paton, Carole A. Goble: Pedro Ontology Services: A Framework for Rapid Ontology Markup. ESWC 2005: 578-591
7		Ugis Sarkans, Helen E. Parkinson, Gonzalo Garcia Lara, Ahmet Oezcimen, Anjan Sharma, Niran Abeygunawardena, Sergio Contrino, Ele Holloway, Philippe Rocca-Serra, Gaurab Mukherjee, Mohammadreza Shojatalab, Misha Kapushesky, Susanna-Assunta Sansone, Anna Farne, Tim F. Rayner, Alvis Brazma: The ArrayExpress gene expression database: a software engineering and implementation perspective. Bioinformatics 21(8): 1495-1501 (2005)
6		Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Niran Abeygunawardena, Sergio Contrino, Richard Coulson, Anna Farne, Gonzalo Garcia Lara, Ele Holloway, Misha Kapushesky, P. Lilja, Gaurab Mukherjee, Ahmet Oezcimen, Tim F. Rayner, Philippe Rocca-Serra, Anjan Sharma, Susanna-Assunta Sansone, Alvis Brazma: ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Research 33(Database-Issue): 553-555 (2005)
	2003
5		Catherine Brooksbank, Evelyn Camon, Midori A. Harris, Michele Magrane, Maria Jesus Martin, Nicola J. Mulder, Claire O'Donovan, Helen E. Parkinson, Mary Ann Tuli, Rolf Apweiler, Ewan Birney, Alvis Brazma, Kim Henrick, Rodrigo Lopez, Guenter Stoesser, Peter Stoehr, Graham Cameron: The European Bioinformatics Institute's data resources. Nucleic Acids Research 31(1): 43-50 (2003)
4		Alvis Brazma, Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, Susanna-Assunta Sansone: ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Research 31(1): 68-71 (2003)
	2002
3		Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, John Quackenbush: An open letter to the scientific journals. Bioinformatics 18(11): 1409 (2002)
2		Vincent Lombard, E. B. Camon, Helen E. Parkinson, Pascal Hingamp, Guenter Stoesser, Nicole Redaschi: EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database. Bioinformatics 18(5): 763-764 (2002)
	2001
1		Guenter Stoesser, Wendy Baker, Alexandra van den Broek, Evelyn Camon, Maria Garcia-Pastor, Carola Kanz, Tamara Kulikova, Vincent Lombard, Rodrigo Lopez, Helen E. Parkinson, Nicole Redaschi, Peter Sterk, Peter Stoehr, Mary Ann Tuli: The EMBL nucleotide sequence database. Nucleic Acids Research 29(1): 17-21 (2001)

Coauthor Index

1	Niran Abeygunawardena	[4] [6] [7] [11] [12] [19] [20]
2	Tomasz Adamusiak	[12] [15] [17] [19] [20] [22] [25]
3	Despoina Antonakaki	[20]
4	Rolf Apweiler	[5]
5	Brian D. Athey	[23]
6	Wendy Baker	[1]
7	Catherine A. Ball	[3] [10] [18]
8	Hugo Berube	[12]
9	Ewan Birney	[5]
10	Xiangqun Zheng Bradley	[12] [13]
11	Marco Brandizi	[12] [19] [24]
12	Alvis Brazma	[3] [4] [5] [6] [7] [10] [11] [12] [14] [16] [17] [18] [19] [24] [25] [26]
13	Alexandra van den Broek	[1]
14	Catherine Brooksbank	[3] [5]
15	Tony Burdett	[12] [18] [19] [20] [25] [26]
16	Graham Cameron	[5]
17	E. B. Camon	[2]
18	Evelyn Camon	[1] [5]
19	Helen C. Causton	[3] [9] [10]
20	Duccio Cavalieri	[3]
21	Sergio Contrino	[6] [7]
22	Richard Coulson	[6] [11] [12]
23	Aedín C. Culhane	[25]
24	Alexander D. Diehl	[23]
25	Miroslaw Dylag	[12] [19]
26	Ibrahim Emam	[12] [16] [19]
27	Liju Fan	[9]
28	Anna Farne	[6] [7] [10] [11] [12] [13] [19] [25]
29	Adam Faulconbridge	[24]
30	Julio Fernandez-Banet	[24]
31	Alexey Filippov	[25]
32	Jennifer Fostel	[9]
33	Gilberto Fragoso	[9]
34	Terry Gaasterland	[3]
35	Laurence Game	[9]
36	Maria Garcia-Pastor	[1]
37	Kevin L. Garwood	[8]
38	Carole A. Goble	[8]
39	Mikhail Gostev (Mike Gostev)	[24]
40	John M. Hancock	[21]
41	Midori A. Harris	[5]
42	Emma Hastings	[18] [19]
43	Yongqun He	[23]
44	Mervi Heiskanen	[9]
45	Kim Henrick	[5]
46	Pascal Hingamp	[2] [3]
47	Peter W. H. Holland	[21]
48	Ele Holloway	[4] [6] [7] [10] [11] [12] [13] [15] [16] [17] [19] [25]
49	Frank Holstege	[3]
50	Wolfgang Huber	[14]
51	Rafael A. Irizarry	[10]
52	Carola Kanz	[1]
53	Misha Kapushesky	[4] [6] [7] [11] [12] [14] [15] [16] [17] [20] [25]
54	Audrey Kauffmann	[14]
55	Patrick Kemmeren	[4]
56	Andrey Klebanov	[25]
57	Nikolay Kolesnikov	[12] [17] [19]
58	N. Kolesnykov	[11]
59	Maria Krestyaninova	[12]
60	Nataliya Kryvych	[25]
61	Tamara Kulikova	[1]
62	Natalja Kurbatova	[19] [20] [25]
63	Pavel Kurnosov	[12] [16] [25]
64	Gonzalo Garcia Lara	[4] [6] [7]
65	P. Lilja	[6] [11]
66	Junmin Liu	[10] [18]
67	Vincent Lombard	[1] [2]
68	Rodrigo Lopez	[1] [5]
69	Phillip W. Lord	[8]
70	Margus Lukk	[11] [12] [13] [14] [19] [26]
71	Michele Magrane	[5]
72	Eamonn Maguire	[12]
73	Donald Maier	[10]
74	James Malone	[12] [13] [15] [16] [17] [19] [21] [22] [23] [25]
75	Roby Mani	[11] [12] [19]
76	Maria Jesus Martin	[5]
77	Terrence F. Meehan	[23]
78	Olga Melnichuk	[25]
79	Michael Miller	[10] [18]
80	Norman Morrison	[9]
81	Gaurab Mukherjee	[6] [7]
82	Nicola J. Mulder	[5]
83	Sudeshna Guha Neogi	[12]
84	Claire O'Donovan	[5]
85	Ahmet Oezcimen	[4] [6] [7]
86	Chao Pang	[21] [22] [23]
87	Norman W. Paton	[8]
88	Kjell Petersen	[10]
89	Robert Petryszak	[25]
90	Ekaterina Pilicheva	[12] [19]
91	Nikolay Pultsin	[25]
92	John Quackenbush	[3] [10]
93	Tim F. Rayner	[6] [7] [10] [11] [12] [13] [14]
94	Nicole Redaschi	[1] [2]
95	Faisal Ibne Rezwan	[12] [13]
96	Martin Ringwald	[3]
97	Philippe Rocca-Serra	[3] [4] [6] [7] [9] [10] [12]
98	Gabriella Rustici	[12] [16] [19] [25]
99	Susanna-Assunta Sansone	[4] [6] [7] [9] [12]
100	Ugis Sarkans	[4] [6] [7] [10] [11] [12] [19] [24]
101	Sirarat Sarntivijai	[23]
102	Paul N. Schofield	[21]
103	Stephan C. Schürer	[23]
104	Ravi Shankar	[18]
105	Anjan Sharma	[6] [7] [11] [12] [19]
106	Gavin Sherlock	[3] [10] [18]
107	Mohammadreza Shojatalab	[4] [6] [7] [11] [12]
108	Nataliya Sklyar	[12] [19]
109	Paul T. Spellman	[3] [10]
110	Rashmi Srinivasa	[18]
111	Peter Sterk	[1]
112	Jason E. Stewart	[3]
113	Christian J. Stoeckert Jr.	[3] [9] [10] [18]
114	Peter Stoehr	[1] [5]
115	Guenter Stoesser	[1] [2] [5]
116	Morris A. Swertz	[20]
117	Julie Taylor	[26]
118	Ronald Taylor	[3]
119	Chris J. Taylor	[9]
120	Andrew Tikhonov	[25]
121	Ravensara S. Travillian	[21] [25]
122	Mary Ann Tuli	[1] [5]
123	K. Joeri van der Velde	[20]
124	Uma Vempati	[23]
125	Jaak Vilo	[4]
126	Patricia L. Whetzel	[9] [10]
127	Joseph White	[9] [10] [18]
128	E. William	[11]
129	Eleanor Williams	[12] [13] [16] [19] [25]
130	Farrell Wymore	[10]
131	Zuoshuang Xiang	[23]
132	Vincent Xue	[26]
133	Mengyao Zhao	[12]
134	Jie Zheng	[17]
135	Anna Zhukova	[17]
136	Andrey Zorin	[16] [25]

Last update Sun Jun 3 16:06:10 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page