 | 2011 |
| 11 |  | Paul A. Jensen,
Jason A. Papin:
Functional integration of a metabolic network model and expression data without arbitrary thresholding.
Bioinformatics 27(4): 541-547 (2011) |
| 10 |  | Matthew A. Oberhardt,
Jacek Puchalka,
Vítor A. P. Martins dos Santos,
Jason A. Papin:
Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis.
PLoS Computational Biology 7(3): (2011) |
| 2009 |
| 9 |  | Brian J. Schmidt,
Jason A. Papin,
Michael B. Lawrence:
Nano-motion Dynamics are Determined by Surface-Tethered Selectin Mechanokinetics and Bond Formation.
PLoS Computational Biology 5(12): (2009) |
| 8 |  | Erwin P. Gianchandani,
Andrew R. Joyce,
Bernhard O. Palsson,
Jason A. Papin:
Functional States of the Genome-Scale Escherichia Coli Transcriptional Regulatory System.
PLoS Computational Biology 5(6): (2009) |
| 2008 |
| 7 |  | Erwin P. Gianchandani,
Matthew A. Oberhardt,
Anthony P. Burgard,
Costas D. Maranas,
Jason A. Papin:
Predicting biological system objectives de novo from internal state measurements.
BMC Bioinformatics 9: (2008) |
| 6 |  | Kristen A. Wieghaus,
Erwin P. Gianchandani,
Mikell A. Paige,
Milton L. Brown,
Edward A. Botchwey,
Jason A. Papin:
Novel pathway compendium analysis elucidates mechanism of pro-angiogenic synthetic small molecule.
Bioinformatics 24(20): 2384-2390 (2008) |
| 5 |  | Jacek Puchalka,
Matthew A. Oberhardt,
Miguel Godinho,
Agata Bielecka,
Daniela Regenhardt,
Kenneth N. Timmis,
Jason A. Papin,
Vítor A. P. Martins dos Santos:
Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology.
PLoS Computational Biology 4(10): (2008) |
| 4 |  | Jong Min Lee,
Erwin P. Gianchandani,
James A. Eddy,
Jason A. Papin:
Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks.
PLoS Computational Biology 4(5): (2008) |
| 2006 |
| 3 |  | Jong Min Lee,
Erwin P. Gianchandani,
Jason A. Papin:
Flux balance analysis in the era of metabolomics.
Briefings in Bioinformatics 7(2): 140-150 (2006) |
| 2 |  | Shayn M. Peirce,
Thomas C. Skalak,
Jason A. Papin:
Multiscale biosystems integration: Coupling intracellular network analysis with tissue-patterning simulations.
IBM Journal of Research and Development 50(6): 601-616 (2006) |
| 1 |  | Erwin P. Gianchandani,
Jason A. Papin,
Nathan D. Price,
Andrew R. Joyce,
Bernhard Ø. Palsson:
Matrix Formalism to Describe Functional States of Transcriptional Regulatory Systems.
PLoS Computational Biology 2(8): (2006) |