Masao Nagasaki

	2012
32		Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano: Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods. IEEE/ACM Trans. Comput. Biology Bioinform. 9(4): 966-972 (2012)
	2011
31		Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano: Poster: Comprehensive pharmacogenomic pathway screening by data assimilation. ICCABS 2011: 246
30		Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Seiya Imoto, Satoru Miyano: Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation. ISBRA 2011: 160-171
29		Masao Nagasaki, Ayumu Saito, André Fujita, Georg Tremmel, Kazuko Ueno, Emi Ikeda, Euna Jeong, Satoru Miyano: Systems biology model repository for macrophage pathway simulation. Bioinformatics 27(11): 1591-1593 (2011)
28		Euna Jeong, Masao Nagasaki, Emi Ikeda, Yayoi Sekiya, Ayumu Saito, Satoru Miyano: CSO validator: improving manual curation workflow for biological pathways. Bioinformatics 27(17): 2471-2472 (2011)
27		Chuan Hock Koh, Masao Nagasaki, Ayumu Saito, Chen Li, Limsoon Wong, Satoru Miyano: MIRACH: efficient model checker for quantitative biological pathway models. Bioinformatics 27(5): 734-735 (2011)
26		Yoshinori Tamada, Rui Yamaguchi, Seiya Imoto, Osamu Hirose, Ryo Yoshida, Masao Nagasaki, Satoru Miyano: SiGN-SSM: open source parallel software for estimating gene networks with state space models. Bioinformatics 27(8): 1172-1173 (2011)
25		Yoshinori Tamada, Seiya Imoto, Hiromitsu Araki, Masao Nagasaki, Cristin G. Print, Stephen D. Charnock-Jones, Satoru Miyano: Estimating Genome-Wide Gene Networks Using Nonparametric Bayesian Network Models on Massively Parallel Computers. IEEE/ACM Trans. Comput. Biology Bioinform. 8(3): 683-697 (2011)
24		Georgios Chalkidis, Masao Nagasaki, Satoru Miyano: High Performance Hybrid Functional Petri Net Simulations of Biological Pathway Models on CUDA. IEEE/ACM Trans. Comput. Biology Bioinform. 8(6): 1545-1556 (2011)
23		Hiroshi Matsuno, Masao Nagasaki, Satoru Miyano: Hybrid Petri net based modeling for biological pathway simulation. Natural Computing 10(3): 1099-1120 (2011)
	2010
22		Shuichi Kawano, Teppei Shimamura, Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Ryo Yoshida, Cristin G. Print, Satoru Miyano: Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning. BIBM 2010: 253-258
21		Kaname Kojima, Masao Nagasaki, Satoru Miyano: An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location information. BMC Bioinformatics 11: 335 (2010)
20		Chuan Hock Koh, Masao Nagasaki, Ayumu Saito, Limsoon Wong, Satoru Miyano: DA 1.0: parameter estimation of biological pathways using data assimilation approach. Bioinformatics 26(14): 1794-1796 (2010)
19		Atsushi Niida, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, André Fujita, Teppei Shimamura, Satoru Miyano: Model-free unsupervised gene set screening based on information enrichment in expression profiles. Bioinformatics 26(24): 3090-3097 (2010)
18		Teppei Shimamura, Seiya Imoto, Rui Yamaguchi, Masao Nagasaki, Satoru Miyano: Inferring dynamic gene networks under varying conditions for transcriptomic network comparison. Bioinformatics 26(8): 1064-1072 (2010)
17		Jin Hwan Do, Masao Nagasaki, Satoru Miyano: The systems approach to the prespore-specific activation of sigma factor SigF in Bacillus subtilis. Biosystems 100(3): 178-184 (2010)
16		André Fujita, João Ricardo Sato, Kaname Kojima, Luciana Rodrigues Gomes, Masao Nagasaki, Mari Cleide Sogayar, Satoru Miyano: Identification of Granger Causality between Gene Sets. J. Bioinformatics and Computational Biology 8(4): 679-701 (2010)
	2009
15		Satoru Miyano, Rui Yamaguchi, Yoshinori Tamada, Masao Nagasaki, Seiya Imoto: Gene Networks Viewed through Two Models. BICoB 2009: 54-66
14		Takanori Yamamoto, Hideo Bannai, Masao Nagasaki, Satoru Miyano: Better Decomposition Heuristics for the Maximum-Weight Connected Graph Problem Using Betweenness Centrality. Discovery Science 2009: 465-472
13		Kazuyuki Nakamura, Ryo Yoshida, Masao Nagasaki, Satoru Miyano, Tomoyuki Higuchi: Parameter Estimation of In Silico Biological Pathways with Particle Filtering Towards a Petascale Computing. Pacific Symposium on Biocomputing 2009: 227-238
12		Yoshinori Tamada, Hiromitsu Araki, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Yuki Tomiyasu, Kaori Yasuda, Ben Dunmore, Deborah Sanders, Sally Humphreys, Cristin G. Print, Stephen D. Charnock-Jones, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano: Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks. Pacific Symposium on Biocomputing 2009: 251-263
11		Tatsunori B. Hashimoto, Masao Nagasaki, Kaname Kojima, Satoru Miyano: BFL: a node and edge betweenness based fast layout algorithm for large scale networks. BMC Bioinformatics 10: (2009)
	2008
10		Kazuyuki Numata, Ryo Yoshida, Masao Nagasaki, Ayumu Saito, Seiya Imoto, Satoru Miyano: ExonMiner: Web service for analysis of GeneChip Exon array data. BMC Bioinformatics 9: (2008)
9		Kaname Kojima, Masao Nagasaki, Satoru Miyano: Fast grid layout algorithm for biological networks with sweep calculation. Bioinformatics 24(12): 1433-1441 (2008)
8		Ryo Yoshida, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tomoyuki Higuchi: Bayesian learning of biological pathways on genomic data assimilation. Bioinformatics 24(22): 2592-2601 (2008)
	2007
7		Ryo Yoshida, Kazuyuki Numata, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Kazuko Ueno, Satoru Miyano: Computational Genome-Wide Discovery of Aberrant Splice Variations with Exon Expression Profiles. BIBE 2007: 715-722
6		Ayumu Saito, Masao Nagasaki, Masaaki Oyama, Hiroko Kozuka-Hata, Kentaro Semba, Sumio Sugano, Tadashi Yamamoto, Satoru Miyano: AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction. BMC Bioinformatics 8: (2007)
5		Kaname Kojima, Masao Nagasaki, Euna Jeong, Mitsuru Kato, Satoru Miyano: An efficient grid layout algorithm for biological networks utilizing various biological attributes. BMC Bioinformatics 8: (2007)
	2004
4		Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Satoru Miyano: Integrating Biopathway Databases for Large-scale Modeling and Simulation. APBC 2004: 43-52
3		Atsushi Doi, Sachie Fujita, Hiroshi Matsuno, Masao Nagasaki, Satoru Miyano: Constructing biological pathway models with hybrid functional Petri net. In Silico Biology 4: (2004)
	2003
2		Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Satoru Miyano: Recreating Biopathway Databases towards Simulation. CMSB 2003: 168-169
1		Hiroshi Matsuno, Sachie Fujita, Atsushi Doi, Masao Nagasaki, Satoru Miyano: Towards Biopathway Modeling and Simulation. ICATPN 2003: 3-22

Coauthor Index

1	Hiromitsu Araki	[12] [25]
2	Hideo Bannai	[14]
3	Georgios Chalkidis	[24]
4	Stephen D. Charnock-Jones	[12] [25]
5	Jin Hwan Do	[17]
6	Atsushi Doi	[1] [2] [3] [4] [7] [12]
7	Ben Dunmore	[12]
8	André Fujita	[16] [19] [29]
9	Sachie Fujita	[1] [3]
10	Luciana Rodrigues Gomes	[16]
11	Takanori Hasegawa	[30] [31]
12	Tatsunori B. Hashimoto	[11]
13	Tomoyuki Higuchi	[8] [13]
14	Osamu Hirose	[26]
15	Sally Humphreys	[12]
16	Emi Ikeda	[28] [29]
17	Seiya Imoto	[7] [8] [10] [12] [15] [18] [19] [22] [25] [26] [30] [31] [32]
18	Euna Jeong	[5] [28] [29]
19	Mitsuru Kato	[5]
20	Shuichi Kawano	[22] [32]
21	Chuan Hock Koh	[20] [27]
22	Kaname Kojima	[5] [9] [11] [16] [21]
23	Hiroko Kozuka-Hata	[6]
24	Satoru Kuhara	[12]
25	Chen Li	[27]
26	Hiroshi Matsuno	[1] [2] [3] [4] [23]
27	Satoru Miyano	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32]
28	Kazuyuki Nakamura	[13]
29	Yukiko Nakanishi	[12]
30	Atsushi Niida	[19] [22] [32]
31	Kazuyuki Numata	[7] [10]
32	Masaaki Oyama	[6]
33	Cristin G. Print	[12] [22] [25] [32]
34	Ayumu Saito	[6] [10] [20] [27] [28] [29]
35	Deborah Sanders	[12]
36	João Ricardo Sato	[16]
37	Yayoi Sekiya	[28]
38	Kentaro Semba	[6]
39	Teppei Shimamura	[18] [19] [22] [32]
40	Mari Cleide Sogayar	[16]
41	Sumio Sugano	[6]
42	Yoshinori Tamada	[12] [15] [25] [26]
43	Kousuke Tashiro	[12]
44	Yuki Tomiyasu	[12]
45	Georg Tremmel	[29]
46	Kazuko Ueno	[7] [29]
47	Limsoon Wong	[20] [27]
48	Rui Yamaguchi	[8] [15] [18] [19] [22] [26] [30] [31] [32]
49	Tadashi Yamamoto	[6]
50	Takanori Yamamoto	[14]
51	Kaori Yasuda	[12]
52	Ryo Yoshida	[7] [8] [10] [13] [22] [26] [32]

Last update Sun Jun 3 16:06:10 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page