 | 2012 |
| 31 |  | Daniele D'Agostino,
Andrea Clematis,
Alessandro Guffanti,
Luciano Milanesi,
Ivan Merelli:
A CUDA-based Implementation of the SSAKE Genomics Application.
PDP 2012: 612-616 |
| 2011 |
| 30 |  | Daniele D'Agostino,
Ivan Merelli,
René L. Warren,
Alessandro Guffanti,
Luciano Milanesi,
Andrea Clematis:
Parallelization of the SSAKE Genomics Application.
PDP 2011: 326-330 |
| 29 |  | Ivan Merelli,
Dario Pescini,
Ettore Mosca,
Paolo Cazzaniga,
Carlo Maj,
Giancarlo Mauri,
Luciano Milanesi:
Grid Computing for Sensitivity Analysis of Stochastic Biological Models.
PaCT 2011: 62-73 |
| 28 |  | Dario Corrada,
Federica Viti,
Ivan Merelli,
Cristina Battaglia,
Luciano Milanesi:
myMIR: a genome-wide microRNA targets identification and annotation tool.
Briefings in Bioinformatics 12(6): 588-600 (2011) |
| 27 |  | Ivan Merelli,
Paolo Cozzi,
Daniele D'Agostino,
Andrea Clematis,
Luciano Milanesi:
Image-Based Surface Matching Algorithm Oriented to Structural Biology.
IEEE/ACM Trans. Comput. Biology Bioinform. 8(4): 1004-1016 (2011) |
| 26 |  | Federica Viti,
Ivan Merelli,
Andrea Calabria,
Paolo Cozzi,
Ettore Mosca,
Roberta Alfieri,
Luciano Milanesi:
Ontology-based resources for bioinformatics analysis.
IJMSO 6(1): 35-45 (2011) |
| 2010 |
| 25 |  | Daniele D'Agostino,
Andrea Clematis,
Ivan Merelli,
Paolo Cozzi,
Luciano Milanesi:
A Parallel Algorithm for Molecular Surface Matching Through Image Representation.
PDP 2010: 387-394 |
| 24 |  | Federica Viti,
Ivan Merelli,
Mieke Timmermans,
Michael den Bakker,
Francesco Beltrame,
Peter Riegman,
Luciano Milanesi:
Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study.
BMC Bioinformatics 11: 566 (2010) |
| 23 |  | Andrea Calabria,
Ettore Mosca,
Federica Viti,
Ivan Merelli,
Luciano Milanesi:
SNPRanker: a tool for identification and scoring of SNPs associated to target genes.
J. Integrative Bioinformatics 7(3): (2010) |
| 22 |  | Ivan Merelli,
Alessandro Guffanti,
Marco Fabbri,
Andrea Cocito,
Laura Furia,
Ursula Grazini,
Raoul J. P. Bonnal,
Luciano Milanesi,
Fraser McBlane:
RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes.
Nucleic Acids Research 38(Web-Server-Issue): 262-267 (2010) |
| 2009 |
| 21 |  | Federica Viti,
Ettore Mosca,
Ivan Merelli,
Andrea Calabria,
Roberta Alfieri,
Luciano Milanesi:
Ontological Enrichment of the Genes-to-Systems Breast Cancer Database.
MTSR 2009: 171-182 |
| 20 |  | Daniele D'Agostino,
Andrea Clematis,
Ivan Merelli,
Paolo Cozzi,
Luciano Milanesi:
Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening.
PDP 2009: 261-267 |
| 19 |  | Ivan Merelli,
Andrea Caprera,
Alessandra Stella,
Marcello Del Corvo,
Luciano Milanesi,
Barbara Lazzari:
The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections.
BMC Bioinformatics 10(S-12): 2 (2009) |
| 18 |  | Federica Chiappori,
Pasqualina D'Ursi,
Ivan Merelli,
Luciano Milanesi,
Ermanna Rovida:
In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study.
BMC Bioinformatics 10(S-12): 3 (2009) |
| 2008 |
| 17 |  | Ivan Merelli,
Paolo Cozzi,
Daniele D'Agostino,
Andrea Clematis,
Luciano Milanesi:
Images Based System for Surface Matching in Macromolecular Screening.
BIBM 2008: 397-401 |
| 16 |  | Antonella Galizia,
Federica Viti,
Alessandro Orro,
Daniele D'Agostino,
Ivan Merelli,
Luciano Milanesi,
Andrea Clematis:
TMAinspect, an EGEE Framework for Tissue MicroArray Image Handling.
CCGRID 2008: 741-746 |
| 15 |  | Paolo Cozzi,
Ivan Merelli,
Luciano Milanesi:
A Visualization ToolKit Based Application for Representing Macromolecular Surfaces.
CIBB 2008: 284-292 |
| 14 |  | Antonella Galizia,
Daniele D'Agostino,
Andrea Clematis,
Federica Viti,
Alessandro Orro,
Ivan Merelli,
Luciano Milanesi:
Enabling Parallel TMA Image Analysis in a Grid Environment.
CISIS 2008: 394-399 |
| 13 |  | Daniele D'Agostino,
Andrea Clematis,
Ivan Merelli,
Luciano Milanesi,
Matteo Coloberti:
A Grid Service based Parallel Molecular Surface Reconstruction System.
PDP 2008: 455-462 |
| 12 |  | Barbara Lazzari,
Andrea Caprera,
Alberto Vecchietti,
Ivan Merelli,
Francesca Barale,
Luciano Milanesi,
Alessandra Stella,
Carlo Pozzi:
Version VI of the ESTree db: an improved tool for peach transcriptome analysis.
BMC Bioinformatics 9(S-2): (2008) |
| 11 |  | Federica Viti,
Ivan Merelli,
Andrea Caprera,
Barbara Lazzari,
Alessandra Stella,
Luciano Milanesi:
Ontology-based, Tissue MicroArray oriented, image centered tissue bank.
BMC Bioinformatics 9(S-4): (2008) |
| 10 |  | Ivan Merelli,
Alessandro Orro,
Daniele D'Agostino,
Andrea Clematis,
Luciano Milanesi:
A parallel protein surface reconstruction system.
IJBRA 4(3): 221-239 (2008) |
| 9 |  | Roberta Alfieri,
Ivan Merelli,
Ettore Mosca,
Luciano Milanesi:
The cell cycle DB: a systems biology approach to cell cycle analysis.
Nucleic Acids Research 36(Database-Issue): 641-645 (2008) |
| 2007 |
| 8 |  | Antonella Galizia,
Federica Viti,
Daniele D'Agostino,
Ivan Merelli,
Luciano Milanesi,
Andrea Clematis:
Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing.
PARCO 2007: 139-146 |
| 7 |  | Daniele D'Agostino,
Ivan Merelli,
Andrea Clematis,
Luciano Milanesi,
Alessandro Orro:
A Parallel Workflow for the Reconstruction of Molecular Surfaces.
PARCO 2007: 147-154 |
| 6 |  | Andrea Caprera,
Barbara Lazzari,
Alessandra Stella,
Ivan Merelli,
Alexandre R. Caetano,
Paola Mariani:
GoSh: a web-based database for goat and sheep EST sequences.
Bioinformatics 23(8): 1043-1045 (2007) |
| 2006 |
| 5 |  | Nicolas Jacq,
Vincent Breton,
Hsin-Yen Chen,
Li-Yung Ho,
Martin Hofmann,
Hurng-Chun Lee,
Yannick Legré,
Simon C. Lin,
Astrid Maaß,
Emmanuel Medernach,
Ivan Merelli,
Luciano Milanesi,
Giulio Rastelli,
Matthieu Reichstadt,
Jean Salzemann,
Horst Schwichtenberg,
Mahendrakar Sridhar,
Vinod Kasam,
Ying-Ta Wu,
Marc Zimmermann:
Grid-Enabled High Throughput Virtual Screening.
GCCB 2006: 45-59 |
| 4 |  | Nicolas Jacq,
Vincent Breton,
Hsin-Yen Chen,
Li-Yung Ho,
Martin Hofmann,
Hurng-Chun Lee,
Yannick Legré,
Simon C. Lin,
Astrid Maaß,
Emmanuel Medernach,
Ivan Merelli,
Luciano Milanesi,
Giulio Rastelli,
Matthieu Reichstadt,
Jean Salzemann,
Horst Schwichtenberg,
Mahendrakar Sridhar,
Vinod Kasam,
Ying-Ta Wu,
Marc Zimmermann:
Large Scale In Silico Screening on Grid Infrastructures
CoRR abs/cs/0611084: (2006) |
| 3 |  | Gabriele Antonio Trombetti,
Ivan Merelli,
Luciano Milanesi:
High performance cDNA sequence analysis using grid technology.
J. Parallel Distrib. Comput. 66(12): 1482-1488 (2006) |
| 2005 |
| 2 |  | Ivan Merelli,
Luciano Milanesi,
Daniele D'Agostino,
Andrea Clematis,
Marco Vanneschi,
Marco Danelutto:
Using Parallel Isosurface Extraction in Superficial Molecular Modeling.
DFMA 2005: 288-294 |
| 1 |  | Ivan Merelli,
Giulia Morra,
Daniele D'Agostino,
Andrea Clematis,
Luciano Milanesi:
High performance workflow implementation for protein surface characterization using grid technology.
BMC Bioinformatics 6(S-4): (2005) |