Pedro Mendes

	2011
32		Pedro Mendes, Natalie J. Stanford, Kieran Smallbone: Kinetic modelling of large-scale metabolic networks. CMSB 2011: 5-6
31		Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell, Norman W. Paton: The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. J. Integrative Bioinformatics 8(2): (2011)
	2010
30		Neil Swainston, Daniel Jameson, Peter Li, Irena Spasic, Pedro Mendes, Norman W. Paton: Integrative Information Management for Systems Biology. DILS 2010: 164-178
29		Peter Li, Joseph O. Dada, Daniel Jameson, Irena Spasic, Neil Swainston, Kathleen Carroll, Warwick B. Dunn, Farid Khan, Naglis Malys, Hanan L. Messiha, Evangelos Simeonidis, Dieter Weichart, Catherine Winder, Jill Wishart, David S. Broomhead, Carole A. Goble, Simon J. Gaskell, Douglas B. Kell, Hans V. Westerhoff, Pedro Mendes, Norman W. Paton: Systematic integration of experimental data and models in systems biology. BMC Bioinformatics 11: 582 (2010)
28		Joseph O. Dada, Irena Spasic, Norman W. Paton, Pedro Mendes: SBRML: a markup language for associating systems biology data with models. Bioinformatics 26(7): 932-938 (2010)
	2009
27		Joseph O. Dada, Pedro Mendes: Design and Architecture of Web Services for Simulation of Biochemical Systems. DILS 2009: 182-195
26		Vasco Vinhas, Pedro Abreu, Pedro Mendes: Business Intelligence based on a Wi-Fi Real Time Positioning Engine - A Practical Application in a Major Retail Company. ICEIS (1) 2009: 11-16
25		Pedro Abreu, Pedro Mendes: Strategies for Route Planning on Catastrophe Environments - Coordinating Agents on a Fire Fighting Scenario. ICEIS (2) 2009: 277-280
24		Neil Swainston, Pedro Mendes: libAnnotationSBML: a library for exploiting SBML annotations. Bioinformatics 25(17): 2292-2293 (2009)
	2008
23		Carlos Amaral, Adán Cassan, Helena Figueira, André F. T. Martins, Afonso Mendes, Pedro Mendes, José Pina, Cláudia Pinto: Priberam's Question Answering System in QA@CLEF 2008. CLEF 2008: 337-344
22		Pedro Abreu, Pedro Mendes: Mastermind: an augment reality approach: [porting a legacy game to new interaction paradigms]. DIMEA 2008: 205-210
21		Pedro Abreu, Vasco Vinhas, Pedro Mendes: Business Intelligence through Real-Time Tracking - Using a Location System Towards Behaviour Pattern Extraction. ICE-B 2008: 51-57
	2007
20		Carlos Amaral, Adán Cassan, Helena Figueira, André F. T. Martins, Afonso Mendes, Pedro Mendes, Cláudia Pinto, Daniel Vidal: Priberam's Question Answering System in QA@CLEF 2007. CLEF 2007: 364-371
19		Dingjun Chen, Chung-Yeol Lee, Cheol Hoon Park, Pedro Mendes: Parallelizing simulated annealing algorithms based on high-performance computer. J. Global Optimization 39(2): 261-289 (2007)
	2006
18		Adán Cassan, Helena Figueira, André F. T. Martins, Afonso Mendes, Pedro Mendes, Cláudia Pinto, Daniel Vidal: Priberam's Question Answering System in a Cross-Language Environment. CLEF 2006: 300-309
17		Sven Sahle, Ralph Gauges, Jürgen Pahle, Natalia Simus, Ursula Kummer, Stefan Hoops, Christine Lee, Mudita Singhal, Liang Xu, Pedro Mendes: Simulation of biochemical networks using COPASI: a complex pathway simulator. Winter Simulation Conference 2006: 1698-1706
16		Herbert M. Sauro, David Harel, Marta Z. Kwiatkowska, Clifford A. Shaffer, Adelinde M. Uhrmacher, Michael Hucka, Pedro Mendes, Lena Strömbäck, John J. Tyson: Challenges for modeling and simulation methods in systems biology. Winter Simulation Conference 2006: 1720-1730
15		Stefan Hoops, Sven Sahle, Ralph Gauges, Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer: COPASI - a COmplex PAthway SImulator. Bioinformatics 22(24): 3067-3074 (2006)
14		Pedro Mendes: Metabolomics and the challenges ahead. Briefings in Bioinformatics 7(2): 127 (2006)
	2005
13		Carlos Amaral, Helena Figueira, André F. T. Martins, Afonso Mendes, Pedro Mendes, Cláudia Pinto: Priberam's Question Answering System for Portuguese. CLEF 2005: 410-419
	2004
12		Alberto de la Fuente, Nan Bing, Ina Hoeschele, Pedro Mendes: Discovery of meaningful associations in genomic data using partial correlation coefficients. Bioinformatics 20(18): 3565-3574 (2004)
	2003
11		Pedro Mendes, Wei Sha, Keying Ye: Artificial gene networks for objective comparison of analysis algorithms. ECCB 2003: 122-129
10		Pedro Mendes, Pedro Araújo: Using the I. S. as a (Dis)Organization Gauge. ICEIS (2) 2003: 171-176
9		Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, D. Bray, A. Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, J. H. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19(4): 524-531 (2003)
	2002
8		Dianjing Guo, Xingjing Li, Aejaaz Kamal, Olga Brazhnik, Pedro Mendes: A Reference Database for Medicago Truncatula Genes, Protiens, and Metabolites. CSB 2002: 343
7		Pedro Mendes: Emerging bioinformatics for the metabolome. Briefings in Bioinformatics 3(2): 134-145 (2002)
	2001
6		Adam C. Siepel, Andrew D. Farmer, Andrew N. Tolopko, Mingzhe Zhuang, Pedro Mendes, William D. Beavis, Bruno W. S. Sobral: ISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources. Bioinformatics 17(1): 83-94 (2001)
5		Pedro Mendes, Douglas B. Kell: MEG (Model Extender for Gepasi): a program for the modelling of complex, heterogeneous, cellular systems. Bioinformatics 17(3): 288-289 (2001)
	1999
4		Pedro Mendes, João Menano: Traffic Simulation of Large Regions. ICEIS 1999: 761
	1998
3		Pedro Mendes, Douglas B. Kell: Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation. Bioinformatics 14(10): 869-883 (1998)
	1993
2		Pedro Mendes: GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems. Computer Applications in the Biosciences 9(5): 563-571 (1993)
	1988
1		Harold Kurstedt, Kwang Lee, Pedro Mendes, Steven Berube: The Responsive System: A New Challenge for AI. IEA/AIE (Vol. 1) 1988: 177-184

Coauthor Index

1	Pedro Abreu	[21] [22] [25] [26]
2	Carlos Amaral	[13] [20] [23]
3	Pedro Araújo	[10]
4	Adam P. Arkin	[9]
5	William D. Beavis	[6]
6	Steven Berube	[1]
7	Nan Bing	[12]
8	H. Bolouri	[9]
9	Benjamin J. Bornstein	[9]
10	D. Bray	[9]
11	Olga Brazhnik	[8]
12	David S. Broomhead	[29]
13	Kathleen Carroll	[29]
14	Adán Cassan	[18] [20] [23]
15	Dingjun Chen	[19]
16	A. Cornish-Bowden	[9]
17	Autumn A. Cuellar	[9]
18	Joseph O. Dada	[27] [28] [29]
19	John Doyle (John C. Doyle)	[9]
20	Serge Dronov	[9]
21	Warwick B. Dunn	[29]
22	Andrew D. Farmer	[6]
23	Helena Figueira	[13] [18] [20] [23]
24	Andrew Finney	[9]
25	Alberto de la Fuente	[12]
26	Simon J. Gaskell	[29]
27	Ralph Gauges	[15] [17]
28	Ernst Dieter Gilles	[9]
29	Martin Ginkel	[9]
30	Carole A. Goble	[29]
31	Victoria Gor	[9]
32	Igor Goryanin	[9]
33	Dianjing Guo	[8]
34	David Harel	[16]
35	W. J. Hedley	[9]
36	Charlie Hodgman (T. Charles Hodgman)	[9]
37	Ina Hoeschele	[12]
38	J. H. Hofmeyr	[9]
39	Stefan Hoops	[15] [17]
40	Michael Hucka	[9] [16]
41	Peter J. Hunter	[9]
42	Daniel Jameson	[29] [30]
43	Nick S. Juty	[9]
44	Aejaaz Kamal	[8]
45	J. L. Kasberger	[9]
46	Douglas B. Kell	[3] [5] [29] [31]
47	Farid Khan	[29]
48	Hiroaki Kitano	[9]
49	Andreas Kremling	[9]
50	Ursula Kummer	[9] [15] [17]
51	Harold Kurstedt	[1]
52	Marta Z. Kwiatkowska	[16]
53	Christine Lee	[15] [17]
54	Chung-Yeol Lee	[19]
55	Kwang Lee	[1]
56	Peter Li	[29] [30]
57	Xingjing Li	[8]
58	Leslie M. Loew	[9]
59	D. Lucio	[9]
60	Naglis Malys	[29]
61	André F. T. Martins (André Filipe Torres Martins)	[13] [18] [20] [23]
62	João Menano	[4]
63	Afonso Mendes	[13] [18] [20] [23]
64	Hanan L. Messiha	[29]
65	E. Minch	[9]
66	Eric Mjolsness	[9]
67	Yoichi Nakayama	[9]
68	M. R. Nelson	[9]
69	Poul M. F. Nielsen	[9]
70	Nicolas Le Novère	[9]
71	Jürgen Pahle	[15] [17]
72	Cheol Hoon Park	[19]
73	Norman W. Paton	[28] [29] [30] [31]
74	José Pina	[23]
75	Cláudia Pinto	[13] [18] [20] [23]
76	Sven Sahle	[15] [17]
77	T. Sakurada	[9]
78	Herbert M. Sauro	[9] [16]
79	James C. Schaff	[9]
80	Wei Sha	[11]
81	Clifford A. Shaffer	[16]
82	Bruce E. Shapiro	[9]
83	Thomas Simon Shimizu	[9]
84	Adam C. Siepel	[6]
85	Evangelos Simeonidis	[29]
86	Natalia Simus	[15] [17]
87	Mudita Singhal	[15] [17]
88	Kieran Smallbone	[31] [32]
89	Bruno W. S. Sobral	[6]
90	Irena Spasic	[28] [29] [30]
91	Hugh D. Spence	[9]
92	Natalie J. Stanford	[32]
93	Jörg Stelling	[9]
94	Lena Strömbäck	[16]
95	Neil Swainston	[24] [29] [30] [31]
96	Koichi Takahashi	[9]
97	Andrew N. Tolopko	[6]
98	Masaru Tomita	[9]
99	John J. Tyson	[16]
100	Adelinde M. Uhrmacher (Adelinde Uhrmacher)	[16]
101	Daniel Vidal	[18] [20]
102	Vasco Vinhas	[21] [26]
103	J. Wagner	[9]
104	J. Wang	[9]
105	Dieter Weichart	[29]
106	Hans V. Westerhoff	[29]
107	Catherine Winder	[29]
108	Jill Wishart	[29]
109	Liang Xu	[15] [17]
110	Keying Ye	[11]
111	Mingzhe Zhuang	[6]

Colors in the list of coauthors

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