 | 2012 |
| 14 |  | Matthew G. Seetin,
David H. Mathews:
TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.
Bioinformatics 28(6): 792-798 (2012) |
| 2011 |
| 13 |  | Gaurav Sharma,
Arif Ozgun Harmanci,
David H. Mathews:
Iterative estimation of structures of multiple RNA homologs: Turbofold.
ICASSP 2011: 529-532 |
| 12 |  | Arif Ozgun Harmanci,
Gaurav Sharma,
David H. Mathews:
TurboFold: Iterative probabilistic estimation of secondary structures for multiple RNA sequences.
BMC Bioinformatics 12: 108 (2011) |
| 11 |  | Zhenjiang Xu,
David H. Mathews:
Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences.
Bioinformatics 27(5): 626-632 (2011) |
| 10 |  | Matthew G. Seetin,
David H. Mathews:
Automated RNA tertiary structure prediction from secondary structure and low-resolution restraints.
Journal of Computational Chemistry 32(10): 2232-2244 (2011) |
| 2010 |
| 9 |  | Jessica S. Reuter,
David H. Mathews:
RNAstructure: software for RNA secondary structure prediction and analysis.
BMC Bioinformatics 11: 129 (2010) |
| 8 |  | Douglas H. Turner,
David H. Mathews:
NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure.
Nucleic Acids Research 38(Database-Issue): 280-282 (2010) |
| 2008 |
| 7 |  | Arif Ozgun Harmanci,
Gaurav Sharma,
David H. Mathews:
Probabilistic structural alignment of RNA sequences.
ICASSP 2008: 645-648 |
| 6 |  | Zhi John Lu,
David H. Mathews:
OligoWalk: an online siRNA design tool utilizing hybridization thermodynamics.
Nucleic Acids Research 36(Web-Server-Issue): 104-108 (2008) |
| 2007 |
| 5 |  | Arif Ozgun Harmanci,
Gaurav Sharma,
David H. Mathews:
Toward Turbo Decoding of RNA Secondary Structure.
ICASSP (1) 2007: 365-368 |
| 4 |  | Mirela Andronescu,
Anne Condon,
Holger H. Hoos,
David H. Mathews,
Kevin P. Murphy:
Efficient parameter estimation for RNA secondary structure prediction.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 19-28 |
| 3 |  | Arif Ozgun Harmanci,
Gaurav Sharma,
David H. Mathews:
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign.
BMC Bioinformatics 8: (2007) |
| 2006 |
| 2 |  | Andrew V. Uzilov,
Joshua M. Keegan,
David H. Mathews:
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change.
BMC Bioinformatics 7: 173 (2006) |
| 2005 |
| 1 |  | David H. Mathews:
Predicting a set of minimal free energy RNA secondary structures common to two sequences.
Bioinformatics 21(10): 2246-2253 (2005) |