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| 2012 | ||
|---|---|---|
| 22 | Marc A. Martí-Renom: The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation. RECOMB 2012: 180 | |
| 2011 | ||
| 21 | Emidio Capriotti, Tomás Norambuena, Marc A. Martí-Renom, Francisco Melo: All-atom knowledge-based potential for RNA structure prediction and assessment. Bioinformatics 27(8): 1086-1093 (2011) | |
| 20 | Marc A. Martí-Renom, Leonid A. Mirny: Bridging the Resolution Gap in Structural Modeling of 3D Genome Organization. PLoS Computational Biology 7(7): (2011) | |
| 2010 | ||
| 19 | Emidio Capriotti, Marc A. Martí-Renom: Quantifying the relationship between sequence and three-dimensional structure conservation in RNA. BMC Bioinformatics 11: 322 (2010) | |
| 2009 | ||
| 18 | Oriol Fornes, Ramon Aragues, Jordi Espadaler, Marc A. Martí-Renom, Andrej Sali, Baldo Oliva: ModLink+: improving fold recognition by using protein-protein interactions. Bioinformatics 25(12): 1506-1512 (2009) | |
| 17 | Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali: MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Research 37(Database-Issue): 347-354 (2009) | |
| 16 | Emidio Capriotti, Marc A. Martí-Renom: SARA: a server for function annotation of RNA structures. Nucleic Acids Research 37(Web-Server-Issue): 260-265 (2009) | |
| 2008 | ||
| 15 | Emidio Capriotti, Marc A. Martí-Renom: RNA structure alignment by a unit-vector approach. ECCB 2008: 112-118 | |
| 14 | Jordi Espadaler, Narayanan Eswar, Enrique Querol, Francesc X. Avilés, Andrej Sali, Marc A. Martí-Renom, Baldomero Oliva: Prediction of enzyme function by combining sequence similarity and protein interactions. BMC Bioinformatics 9: (2008) | |
| 2007 | ||
| 13 | Marc A. Martí-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P. Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali: The AnnoLite and AnnoLyze programs for comparative annotation of protein structures. BMC Bioinformatics 8(S-4): (2007) | |
| 12 | Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali: DBAli tools: mining the protein structure space. Nucleic Acids Research 35(Web-Server-Issue): 393-397 (2007) | |
| 11 | Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A. Martí-Renom, Baldo Oliva: Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions. PLoS Computational Biology 3(9): (2007) | |
| 2006 | ||
| 10 | Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali: MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Research 34(Database-Issue): 291-295 (2006) | |
| 2004 | ||
| 9 | Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali: MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Research 32(Database-Issue): 217-222 (2004) | |
| 2003 | ||
| 8 | Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Linda McMahan, Andrej Sali: ModView, visualization of multiple protein sequences and structures. Bioinformatics 19(1): 165-166 (2003) | |
| 7 | Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost: EVA: evaluation of protein structure prediction servers. Nucleic Acids Research 31(13): 3311-3315 (2003) | |
| 6 | Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali: Tools for comparative protein structure modeling and analysis. Nucleic Acids Research 31(13): 3375-3380 (2003) | |
| 2001 | ||
| 5 | Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost: EVA: continuous automatic evaluation of protein structure prediction servers. Bioinformatics 17(12): 1242-1243 (2001) | |
| 4 | Marc A. Martí-Renom, Valentin A. Ilyin, Andrej Sali: DBAli: a database of protein structure alignments. Bioinformatics 17(8): 746-747 (2001) | |
| 3 | José M. Mas, Patrick Aloy, Marc A. Martí-Renom, Baldomero Oliva, R. de Llorens, Francesc X. Avilés, Enrique Querol: Classification of protein disulphide-bridge topologies. Journal of Computer-Aided Molecular Design 15(5): 477-487 (2001) | |
| 2000 | ||
| 2 | Xavier Serra-Hartmann, Xavier Rebordosa, Jaume Piñol, Enrique Querol, Marc A. Martí-Renom: ASAP: analysis of peptide composition. Bioinformatics 16(12): 1153-1154 (2000) | |
| 1 | Patrick Aloy, José M. Mas, Marc A. Martí-Renom, Enrique Querol, Francesc X. Avilés, Baldomero Oliva: Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2. Journal of Computer-Aided Molecular Design 14(1): 83-92 (2000) | |
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