 | 2012 |
| 15 |  | Anna A. Nilulova,
Alexander V. Favorov,
Vsevolod Makeev,
Andrey A. Mironov:
A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure.
BIOINFORMATICS 2012: 34-41 |
| 2011 |
| 14 |  | Ivan V. Kulakovskiy,
A. A. Belostotsky,
A. S. Kasianov,
Natalie G. Esipova,
Y. A. Medvedeva,
I. A. Eliseeva,
Vsevolod Makeev:
A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites.
Bioinformatics 27(19): 2621-2624 (2011) |
| 2010 |
| 13 |  | Ivan V. Kulakovskiy,
Valentina Boeva,
Alexander V. Favorov,
Vsevolod Makeev:
Deep and wide digging for binding motifs in ChIP-Seq data.
Bioinformatics 26(20): 2622-2623 (2010) |
| 12 |  | Sergei Rahmanov,
Ivan V. Kulakovskiy,
Leonid Uroshlev,
Vsevolod Makeev:
Empirical Potentials for ion Binding in proteins.
J. Bioinformatics and Computational Biology 8(3): 427-435 (2010) |
| 2009 |
| 11 |  | Ivan V. Kulakovskiy,
Alexander V. Favorov,
Vsevolod Makeev:
Motif discovery and motif finding from genome-mapped DNase footprint data.
Bioinformatics 25(18): 2318-2325 (2009) |
| 2007 |
| 10 |  | Valentina Boeva,
Julien Clément,
Mireille Régnier,
Mikhail A. Roytberg,
Vsevolod Makeev:
Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules.
Algorithms for Molecular Biology 2: (2007) |
| 2006 |
| 9 |  | Valentina Boeva,
Mireille Régnier,
Dmitri A. Papatsenko,
Vsevolod Makeev:
Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression.
Bioinformatics 22(6): 676-684 (2006) |
| 2005 |
| 8 |  | Alexander V. Favorov,
Mikhail S. Gelfand,
Anna V. Gerasimova,
Dmitry A. Ravcheev,
Andrey A. Mironov,
Vsevolod Makeev:
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.
Bioinformatics 21(10): 2240-2245 (2005) |
| 2003 |
| 7 |  | Mathias Vandenbogaert,
Vsevolod Makeev:
Analysis of bacterial RM-Systems through genome-scale analysis and related taxonomic issues.
In Silico Biology 3: 12 (2003) |
| 6 |  | Olga V. Kalinina,
Vsevolod Makeev,
Roman A. Sutormin,
Mikhail S. Gelfand,
Aleksandra B. Rakhmaninova:
The channel in transporters is formed by residues that are rare in transmembrane helices.
In Silico Biology 3: 17 (2003) |
| 2001 |
| 5 |  | Vasily Ramensky,
Vsevolod Makeev,
Mikhail A. Roytberg,
Vladimir G. Tumanyan:
Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software.
Bioinformatics 17(11): 1065-1066 (2001) |
| 2000 |
| 4 |  | Mireille Régnier,
Alexandre Lifanov,
Vsevolod Makeev:
Three Variations on Word Counting.
German Conference on Bioinformatics 2000: 75-82 |
| 3 |  | Vsevolod Makeev,
Vasily Ramensky,
Mikhail S. Gelfand,
Mikhail A. Roytberg,
Vladimir G. Tumanyan:
Bayesian Approach to DNA Segmentation into Regions with Different Average Nucleotide Composition.
JOBIM 2000: 57-73 |
| 2 |  | Vasily Ramensky,
Vsevolod Makeev,
Mikhail A. Roytberg,
Vladimir G. Tumanyan:
DNA Segmentation Through the Bayesian Approach.
Journal of Computational Biology 7(1-2): 215-231 (2000) |
| 1996 |
| 1 |  | Vsevolod Makeev,
Vladimir G. Tumanyan:
Search of periodicities in primary structure of biopolymers: a general Fourier approach.
Computer Applications in the Biosciences 12(1): 49-54 (1996) |