Claus Lundegaard

	2010
15		Claus Lundegaard, M. Buggert, A. C. Karlsson, Ole Lund, Carina Perez, Morten Nielsen: PopCover: a method for selecting of peptides with optimal population and pathogen coverage. BCB 2010: 658-659
14		Morten Nielsen, Claus Lundegaard, Ole Lund, Thomas Nordahl Petersen: CPHmodels-3.0 - remote homology modeling using structure-guided sequence profiles. Nucleic Acids Research 38(Web-Server-Issue): 576-581 (2010)
	2009
13		Hao Zhang, Claus Lundegaard, Morten Nielsen: Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods. Bioinformatics 25(1): 83-89 (2009)
	2008
12		Claus Lundegaard, Ole Lund, Morten Nielsen: Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers. Bioinformatics 24(11): 1397-1398 (2008)
11		Claus Lundegaard, Kasper Lamberth, Mikkel Harndahl, Søren Buus, Ole Lund, Morten Nielsen: NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11. Nucleic Acids Research 36(Web-Server-Issue): 509-512 (2008)
10		Qing Zhang, Peng Wang, Yohan Kim, Pernille Haste-Andersen, John E. Beaver, Philip E. Bourne, Huynh-Hoa Bui, Søren Buus, Sune Frankild, Jason Greenbaum, Ole Lund, Claus Lundegaard, Morten Nielsen, Julia V. Ponomarenko, Alessandro Sette, Zhanyang Zhu, Björn Peters: Immune epitope database analysis resource (IEDB-AR). Nucleic Acids Research 36(Web-Server-Issue): 513-518 (2008)
9		Morten Nielsen, Claus Lundegaard, Thomas Blicher, Bjoern Peters, Alessandro Sette, Sune Justesen, Søren Buus, Ole Lund: Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan. PLoS Computational Biology 4(7): (2008)
	2007
8		Mette V. Larsen, Claus Lundegaard, Kasper Lamberth, Søren Buus, Ole Lund, Morten Nielsen: Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. BMC Bioinformatics 8: (2007)
7		Morten Nielsen, Claus Lundegaard, Ole Lund: Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method. BMC Bioinformatics 8: (2007)
6		Claus Lundegaard, Ole Lund, Can Kesmir, Søren Brunak, Morten Nielsen: Modeling the adaptive immune system: predictions and simulations. Bioinformatics 23(24): 3265-3275 (2007)
	2006
5		Bjoern Peters, Huynh-Hoa Bui, Sune Frankild, Morten Nielsen, Claus Lundegaard, Emrah Kostem, Derek Basch, Kasper Lamberth, Mikkel Harndahl, Ward Fleri, Stephen S. Wilson, John Sidney, Ole Lund, Søren Buus, Alessandro Sette: A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules. PLoS Computational Biology 2(6): (2006)
	2004
4		Claus Lundegaard, Morten Nielsen, Kasper Lamberth, Peder Worning, Christina Sylvester-Hvid, Søren Buus, Søren Brunak, Ole Lund: MHC Class I Epitope Binding Prediction Trained on Small Data Sets. ICARIS 2004: 217-225
3		Morten Nielsen, Claus Lundegaard, Peder Worning, Christina Sylvester-Hvid, Kasper Lamberth, Søren Buus, Søren Brunak, Ole Lund: Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach. Bioinformatics 20(9): 1388-1397 (2004)
	2003
2		Claus Lundegaard, Thomas Nordahl Petersen, Morten Nielsen, Henrik Bohr, Jakob Bohr, Søren Brunak, Garry Gippert, Ole Lund: Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks. Mathematical Methods for Protein Structure Analysis and Design 2003: 117-122
1		Jens Kaae Christensen, Kasper Lamberth, Morten Nielsen, Claus Lundegaard, Peder Worning, Sanne Lise Lauemøller, Søren Buus, Søren Brunak, Ole Lund: Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach. Neural Computation 15(12): 2931-2942 (2003)

Coauthor Index

1	Derek Basch	[5]
2	John E. Beaver	[10]
3	Thomas Blicher	[9]
4	Henrik Bohr	[2]
5	Jakob Bohr	[2]
6	Philip E. Bourne	[10]
7	Søren Brunak	[1] [2] [3] [4] [6]
8	M. Buggert	[15]
9	Huynh-Hoa Bui	[5] [10]
10	Søren Buus	[1] [3] [4] [5] [8] [9] [10] [11]
11	Jens Kaae Christensen	[1]
12	Ward Fleri	[5]
13	Sune Frankild	[5] [10]
14	Garry Gippert	[2]
15	Jason Greenbaum	[10]
16	Mikkel Harndahl	[5] [11]
17	Pernille Haste-Andersen	[10]
18	Sune Justesen	[9]
19	A. C. Karlsson	[15]
20	Can Kesmir	[6]
21	Yohan Kim	[10]
22	Emrah Kostem	[5]
23	Kasper Lamberth	[1] [3] [4] [5] [8] [11]
24	Mette V. Larsen	[8]
25	Sanne Lise Lauemøller	[1]
26	Ole Lund	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [14] [15]
27	Morten Nielsen	[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15]
28	Carina Perez	[15]
29	Björn Peters (Bjoern Peters)	[5] [9] [10]
30	Thomas Nordahl Petersen	[2] [14]
31	Julia V. Ponomarenko	[10]
32	Alessandro Sette	[5] [9] [10]
33	John Sidney	[5]
34	Christina Sylvester-Hvid	[3] [4]
35	Peng Wang	[10]
36	Stephen S. Wilson	[5]
37	Peder Worning	[1] [3] [4]
38	Hao Zhang	[13]
39	Qing Zhang	[10]
40	Zhanyang Zhu	[10]

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