 | 2012 |
| 28 |  | Aurélie Névéol,
Jiao Li,
Zhiyong Lu:
Linking multiple disease-related resources through UMLS.
IHI 2012: 767-772 |
| 27 |  | Eric W. Sayers,
Tanya Barrett,
Dennis A. Benson,
Evan Bolton,
Stephen H. Bryant,
Kathi Canese,
Vyacheslav Chetvernin,
Deanna M. Church,
Michael DiCuccio,
Scott Federhen,
Michael Feolo,
Ian M. Fingerman,
Lewis Y. Geer,
Wolfgang Helmberg,
Yuri Kapustin,
Sergey Krasnov,
David Landsman,
David J. Lipman,
Zhiyong Lu,
Thomas L. Madden,
Tom Madej,
Donna R. Maglott,
Aron Marchler-Bauer,
Vadim Miller,
Ilene Karsch-Mizrachi,
James Ostell,
Anna R. Panchenko,
Lon Phan,
Kim D. Pruitt,
Gregory D. Schuler,
Edwin Sequeira,
Stephen T. Sherry,
Martin Shumway,
Karl Sirotkin,
Douglas J. Slotta,
Alexandre Souvorov,
Grigory Starchenko,
Tatiana A. Tatusova,
Lukas Wagner,
Yanli Wang,
W. John Wilbur,
Eugene Yaschenko,
Jian Ye:
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Research 40(Database-Issue): 13-25 (2012) |
| 2011 |
| 26 |  | Aurélie Névéol,
W. John Wilbur,
Zhiyong Lu:
Extraction of data deposition statements from the literature: a method for automatically tracking research results.
Bioinformatics 27(23): 3306-3312 (2011) |
| 25 |  | Minlie Huang,
Aurélie Névéol,
Zhiyong Lu:
Recommending MeSH terms for annotating biomedical articles.
JAMIA 18(5): 660-667 (2011) |
| 24 |  | Aurélie Névéol,
Rezarta Islamaj Dogan,
Zhiyong Lu:
Semi-automatic semantic annotation of PubMed queries: A study on quality, efficiency, satisfaction.
Journal of Biomedical Informatics 44(2): 310-318 (2011) |
| 23 |  | Eric W. Sayers,
Tanya Barrett,
Dennis A. Benson,
Evan Bolton,
Stephen H. Bryant,
Kathi Canese,
Vyacheslav Chetvernin,
Deanna M. Church,
Michael DiCuccio,
Scott Federhen,
Michael Feolo,
Ian M. Fingerman,
Lewis Y. Geer,
Wolfgang Helmberg,
Yuri Kapustin,
David Landsman,
David J. Lipman,
Zhiyong Lu,
Thomas L. Madden,
Tom Madej,
Donna R. Maglott,
Aron Marchler-Bauer,
Vadim Miller,
Ilene Mizrachi,
James Ostell,
Anna R. Panchenko,
Lon Phan,
Kim D. Pruitt,
Gregory D. Schuler,
Edwin Sequeira,
Stephen T. Sherry,
Martin Shumway,
Karl Sirotkin,
Douglas J. Slotta,
Alexandre Souvorov,
Grigory Starchenko,
Tatiana A. Tatusova,
Lukas Wagner,
Yanli Wang,
W. John Wilbur,
Eugene Yaschenko,
Jian Ye:
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Research 39(Database-Issue): 38-51 (2011) |
| 2010 |
| 22 |  | Minlie Huang,
Zhiyong Lu:
Learning to Annotate Scientific Publications.
COLING (Posters) 2010: 463-471 |
| 21 |  | Rezarta Islamaj Dogan,
Aurélie Névéol,
Zhiyong Lu:
A Textual Representation Scheme for Identifying Clinical Relationships in Patient Records.
ICMLA 2010: 995-998 |
| 20 |  | Aurélie Névéol,
Zhiyong Lu:
Automatic integration of drug indications from multiple health resources.
IHI 2010: 666-673 |
| 19 |  | Rezarta Islamaj Dogan,
Zhiyong Lu:
Click-words: learning to predict document keywords from a user perspective.
Bioinformatics 26(21): 2767-2775 (2010) |
| 18 |  | James G. Mork,
Olivier Bodenreider,
Dina Demner-Fushman,
Rezarta Islamaj Dogan,
François-Michel Lang,
Zhiyong Lu,
Aurélie Névéol,
Lee B. Peters,
Sonya E. Shooshan,
Alan R. Aronson:
Extracting Rx information from clinical narrative.
JAMIA 17(5): 536-539 (2010) |
| 17 |  | Eric W. Sayers,
Tanya Barrett,
Dennis A. Benson,
Evan Bolton,
Stephen H. Bryant,
Kathi Canese,
Vyacheslav Chetvernin,
Deanna M. Church,
Michael DiCuccio,
Scott Federhen,
Michael Feolo,
Lewis Y. Geer,
Wolfgang Helmberg,
Yuri Kapustin,
David Landsman,
David J. Lipman,
Zhiyong Lu,
Thomas L. Madden,
Tom Madej,
Donna R. Maglott,
Aron Marchler-Bauer,
Vadim Miller,
Ilene Mizrachi,
James Ostell,
Anna R. Panchenko,
Kim D. Pruitt,
Gregory D. Schuler,
Edwin Sequeira,
Stephen T. Sherry,
Martin Shumway,
Karl Sirotkin,
Douglas J. Slotta,
Alexandre Souvorov,
Grigory Starchenko,
Tatiana A. Tatusova,
Lukas Wagner,
Yanli Wang,
W. John Wilbur,
Eugene Yaschenko,
Jian Ye:
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Research 38(Database-Issue): 5-16 (2010) |
| 2009 |
| 16 |  | G. Craig Murray,
Jimmy J. Lin,
W. John Wilbur,
Zhiyong Lu:
Users' adjustments to unsuccessful queries in biomedical search.
JCDL 2009: 433-434 |
| 15 |  | Shouyuan Chen,
Minlie Huang,
Zhiyong Lu:
Summarizing Documents by Measuring the Importance of a Subset of Vertices within a Graph.
Web Intelligence 2009: 269-272 |
| 14 |  | Zhiyong Lu,
Natalie Xie,
W. John Wilbur:
Identifying related journals through log analysis.
Bioinformatics 25(22): 3038-3039 (2009) |
| 13 |  | Zhiyong Lu,
Won Kim,
W. John Wilbur:
Evaluation of query expansion using MeSH in PubMed.
Inf. Retr. 12(1): 69-80 (2009) |
| 12 |  | Zhiyong Lu,
Won Kim,
W. John Wilbur:
Viewpoint Paper: Evaluating Relevance Ranking Strategies for MEDLINE Retrieval.
JAMIA 16(1): 32-36 (2009) |
| 11 |  | Zhiyong Lu,
W. John Wilbur:
Improving accuracy for identifying related PubMed queries by an integrated approach.
Journal of Biomedical Informatics 42(5): 831-838 (2009) |
| 2008 |
| 10 |  | Lawrence Hunter,
Zhiyong Lu,
James Firby,
William A. Baumgartner Jr.,
Helen L. Johnson,
Philip V. Ogren,
K. Bretonnel Cohen:
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.
BMC Bioinformatics 9: (2008) |
| 9 |  | Steven Bethard,
Zhiyong Lu,
James H. Martin,
Lawrence Hunter:
Semantic role labeling for protein transport predicates.
BMC Bioinformatics 9: (2008) |
| 2007 |
| 8 |  | Zhiyong Lu,
K. Bretonnel Cohen,
Lawrence Hunter:
Generif Quality Assurance as Summary Revision.
Pacific Symposium on Biocomputing 2007: 269-280 |
| 7 |  | Oliver Schulte,
Flavia Moser,
Martin Ester,
Zhiyong Lu:
Association Rules in the Relational Calculus
CoRR abs/0710.2083: (2007) |
| 2006 |
| 6 |  | Helen L. Johnson,
K. Bretonnel Cohen,
William A. Baumgartner Jr.,
Zhiyong Lu,
Michael Bada,
Todd Kester,
Hyunmin Kim,
Lawrence Hunter:
Evaluation of Lexical Methods for Detecting Relationships Between Concepts from Multiple Ontologies.
Pacific Symposium on Biocomputing 2006: 28-39 |
| 5 |  | Zhiyong Lu,
K. Bretonnel Cohen,
Lawrence Hunter:
Finding GeneRIFs via Gene Ontology Annotations.
Pacific Symposium on Biocomputing 2006: 52-63 |
| 4 |  | J. Gregory Caporaso,
William A. Baumgartner Jr.,
Hyunmin Kim,
Zhiyong Lu,
Helen L. Johnson,
Olga Medvedeva,
Anna Lindemann,
Lynne M. Fox,
Elizabeth K. White,
K. Bretonnel Cohen,
Lawrence Hunter:
Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering.
TREC 2006 |
| 2004 |
| 3 |  | Zhiyong Lu,
Duane Szafron,
Russell Greiner,
Paul Lu,
David S. Wishart,
Brett Poulin,
John Anvik,
Cam Macdonell,
Roman Eisner:
Predicting subcellular localization of proteins using machine-learned classifiers.
Bioinformatics 20(4): 547-556 (2004) |
| 2 |  | Duane Szafron,
Paul Lu,
Russell Greiner,
David S. Wishart,
Brett Poulin,
Roman Eisner,
Zhiyong Lu,
John Anvik,
Cam Macdonell,
Alona Fyshe,
David Meeuwis:
Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations.
Nucleic Acids Research 32(Web-Server-Issue): 365-371 (2004) |
| 2003 |
| 1 |  | Jörg Sander,
Xuejie Qin,
Zhiyong Lu,
Nan Niu,
Alex Kovarsky:
Automatic Extraction of Clusters from Hierarchical Clustering Representations.
PAKDD 2003: 75-87 |