 | 2012 |
| 11 |  | Bo Qin,
Meng Zhou,
Ying Ge,
Len Taing,
Tao Liu,
Qian Wang,
Su Wang,
Junsheng Chen,
Lingling Shen,
Xikun Duan,
Sheng'en Hu,
Wei Li,
Henry Long,
Yong Zhang,
X. Shirley Liu:
CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human.
Bioinformatics 28(10): 1411-1412 (2012) |
| 2011 |
| 10 |  | Clifford A. Meyer,
Housheng H. He,
Myles Brown,
X. Shirley Liu:
BINOCh: binding inference from nucleosome occupancy changes.
Bioinformatics [ISMB/ECCB] 27(13): 1867-1868 (2011) |
| 9 |  | Qingyi Cao,
Meng Zhou,
Xujun Wang,
Clifford A. Meyer,
Yong Zhang,
Zhi Chen,
Cheng Li,
X. Shirley Liu:
CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data.
Nucleic Acids Research 39(Database-Issue): 968-974 (2011) |
| 2009 |
| 8 |  | Hyunjin Shin,
Tao Liu,
Arjun K. Manrai,
X. Shirley Liu:
CEAS: cis-regulatory element annotation system.
Bioinformatics 25(19): 2605-2606 (2009) |
| 2007 |
| 7 |  | Wei Li,
Jason S. Carroll,
Myles Brown,
X. Shirley Liu:
xMAN: extreme MApping of oligoNucleotides.
BIOCOMP 2007: 631-637 |
| 6 |  | Jun S. Song,
Kaveh Maghsoudi,
Wei Li,
Edward Fox,
John Quackenbush,
X. Shirley Liu:
Microarray blob-defect removal improves array analysis.
Bioinformatics 23(8): 966-971 (2007) |
| 5 |  | X. Shirley Liu:
Getting Started in Tiling Microarray Analysis.
PLoS Computational Biology 3(10): (2007) |
| 2006 |
| 4 |  | Xuwo Ji,
Wei Li,
Jun Song,
Liping Wei,
X. Shirley Liu:
CEAS: cis-regulatory element annotation system.
Nucleic Acids Research 34(Web-Server-Issue): 551-554 (2006) |
| 2005 |
| 3 |  | Wei Li,
Clifford A. Meyer,
X. Shirley Liu:
A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences.
ISMB (Supplement of Bioinformatics) 2005: 274-282 |
| 2 |  | Pengyu Hong,
X. Shirley Liu,
Qing Zhou,
Xin Lu,
Jun S. Liu,
Wing Hung Wong:
A boosting approach for motif modeling using ChIP-chip data.
Bioinformatics 21(11): 2636-2643 (2005) |
| 2004 |
| 1 |  | Yueyi Liu,
Liping Wei,
Serafim Batzoglou,
Douglas L. Brutlag,
Jun S. Liu,
X. Shirley Liu:
A suite of web-based programs to search for transcriptional regulatory motifs.
Nucleic Acids Research 32(Web-Server-Issue): 204-207 (2004) |