Jun S. Liu

	2012
42		Ming Hu, Yu Zhu, Jeremy M. G. Taylor, Jun S. Liu, Zhaohui S. Qin: Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq. Bioinformatics 28(1): 63-68 (2012)
41		Sentil Balaji, Charles Mcclendon, Rajesh Chowdhary, Jun S. Liu, Jinfeng Zhang: IMID: integrated molecular interaction database. Bioinformatics 28(5): 747-749 (2012)
	2011
40		Bo Jiang, Jun S. Liu: Statistical Learning and Modeling of TF-DNA Binding. Handbook of Statistical Bioinformatics 2011: 55-72
	2010
39		Hanchang Sun, Yuan Yuan, Yibo Wu, Hui Liu, Jun S. Liu, Hongwei Xie: Tmod: toolbox of motif discovery. Bioinformatics 26(3): 405-407 (2010)
38		Wei Zhang, Jun Zhu, Eric E. Schadt, Jun S. Liu: A Bayesian Partition Method for Detecting Pleiotropic and Epistatic eQTL Modules. PLoS Computational Biology 6(1): (2010)
	2009
37		Rajesh Chowdhary, Jinfeng Zhang, Jun S. Liu: Bayesian inference of protein-protein interactions from biological literature. Bioinformatics 25(12): 1536-1542 (2009)
36		Patrycja Vasilyev Missiuro, Kesheng Liu, Lihua Zou, Brian C. Ross, Guoyan Zhao, Jun S. Liu, Hui Ge: Information Flow Analysis of Interactome Networks. PLoS Computational Biology 5(4): (2009)
	2008
35		Dongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu: PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. ISBRA 2008: 110-121
34		Guo-Cheng Yuan, Jun S. Liu: Genomic Sequence Is Highly Predictive of Local Nucleosome Depletion. PLoS Computational Biology 4(1): (2008)
33		Lihua Zou, Sira Sriswasdi, Brian C. Ross, Patrycja Vasilyev Missiuro, Jun S. Liu, Hui Ge: Systematic Analysis of Pleiotropy in C. elegans Early Embryogenesis. PLoS Computational Biology 4(2): (2008)
	2007
32		Guo-Cheng Yuan, Jun S. Liu: Statistial Analysis of nucleosome occupancy and histone modification data. BIBE 2007: 8
31		Jiajun Gu, Jun S. Liu: Bayesian Biclustering of Microarray Data. BIOCOMP 2007: 113-120
30		Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu: Statistical power of phylo-HMM for evolutionarily conserved element detection. BMC Bioinformatics 8: (2007)
29		Yuan Yuan, Lei Guo, Lei Shen, Jun S. Liu: Predicting Gene Expression from Sequence: A Reexamination. PLoS Computational Biology 3(11): (2007)
28		Gopi Goswami, Jun S. Liu: On learning strategies for evolutionary Monte Carlo. Statistics and Computing 17(1): 23-38 (2007)
	2006
27		Xuegong Zhang, Xin Lu, Qian Shi, Xiu-qin Xu, Hon-chiu E. Leung, Lyndsay N. Harris, James D. Iglehart, Alexander Miron, Jun S. Liu, Wing Hung Wong: Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data. BMC Bioinformatics 7: 197 (2006)
26		Erin M. Conlon, Joon J. Song, Jun S. Liu: Bayesian models for pooling microarray studies with multiple sources of replications. BMC Bioinformatics 7: 247 (2006)
25		Jinfeng Zhang, Jun S. Liu: On Side-Chain Conformational Entropy of Proteins. PLoS Computational Biology 2(12): (2006)
	2005
24		Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun: HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinformatics 21(1): 131-134 (2005)
23		Pengyu Hong, X. Shirley Liu, Qing Zhou, Xin Lu, Jun S. Liu, Wing Hung Wong: A boosting approach for motif modeling using ChIP-chip data. Bioinformatics 21(11): 2636-2643 (2005)
22		Dongsheng Che, Shane T. Jensen, Liming Cai, Jun S. Liu: BEST: Binding-site Estimation Suite of Tools. Bioinformatics 21(12): 2909-2911 (2005)
21		Shane T. Jensen, Lei Shen, Jun S. Liu: Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes. Bioinformatics 21(20): 3832-3839 (2005)
20		Wenxuan Zhong, Peng Zeng, Ping Ma, Jun S. Liu, Michael Yu Zhu: RSIR: regularized sliced inverse regression for motif discovery. Bioinformatics 21(22): 4169-4175 (2005)
	2004
19		Andrew F. Neuwald, Jun S. Liu: Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model. BMC Bioinformatics 5: 157 (2004)
18		Shane T. Jensen, Jun S. Liu: BioOptimizer: a Bayesian scoring function approach to motif discovery. Bioinformatics 20(10): 1557-1564 (2004)
17		Qing Zhou, Jun S. Liu: Modeling within-motif dependence for transcription factor binding site predictions. Bioinformatics 20(6): 909-916 (2004)
16		Haiyan Huang, Ming-Chih J. Kao, Xianghong Jasmine Zhou, Jun S. Liu, Wing Hung Wong: Determination of Local Statistical Significance of Patterns in Markov Sequences with Application to Promoter Element Identification. Journal of Computational Biology 11(1): 1-14 (2004)
15		Yueyi Liu, Liping Wei, Serafim Batzoglou, Douglas L. Brutlag, Jun S. Liu, X. Shirley Liu: A suite of web-based programs to search for transcriptional regulatory motifs. Nucleic Acids Research 32(Web-Server-Issue): 204-207 (2004)
	2003
14		Xin Lu, Wen Zhang, Zhaohui S. Qin, Jun S. Liu: Statistical Resynchronization and Detection of Periodic Transcripts. CSB 2003: 394-395
	2002
13		Tianhua Niu, Xin Lu, Hosung Kang, Zhaohui S. Qin, Jun S. Liu: Haplotype Inference and Its Application in Linkage Disequilibrium Mapping. Computational Methods for SNPs and Haplotype Inference 2002: 48-61
12		Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun: Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. Computational Methods for SNPs and Haplotype Inference 2002: 96-112
11		Rong Chen, Jun S. Liu, Xiaodong Wang: Convergence analyses and comparisons of Markov chain Monte Carlo algorithms in digital communications. IEEE Transactions on Signal Processing 50(2): 255-270 (2002)
10		Xiaodong Wang, Rong Chen, Jun S. Liu: Monte Carlo Bayesian Signal Processing for Wireless Communications. VLSI Signal Processing 30(1-3): 89-105 (2002)
	2001
9		X. Liu, Douglas L. Brutlag, Jun S. Liu: BioProspector: Discovering Conserved DNA Motifs in Upstream Regulatory Regions of Co-Expressed Genes. Pacific Symposium on Biocomputing 2001: 127-138
	2000
8		Jason Cong, Tianming Kong, Faming Liang, Jun S. Liu, Wing Hung Wong, Dongmin Xu: Dynamic weighting Monte Carlo for constrained floorplan designs in mixed signal application. ASP-DAC 2000: 277-282
7		Rong Chen, Xiaodong Wang, Jun S. Liu: Adaptive joint detection and decoding in flat-fading channels via mixture Kalman filtering. IEEE Transactions on Information Theory 46(6): 2079-2094 (2000)
6		Scott C. Schmidler, Jun S. Liu, Douglas L. Brutlag: Bayesian Segmentation of Protein Secondary Structure. Journal of Computational Biology 7(1-2): 233-248 (2000)
	1999
5		Jason Cong, Tianming Kong, Dongmin Xu, Faming Liang, Jun S. Liu, Wing Hung Wong: Relaxed Simulated Tempering for VLSI Floorplan Designs. ASP-DAC 1999: 13-16
4		Jun S. Liu, Charles E. Lawrence: Bayesian inference on biopolymer models. Bioinformatics 15(1): 38-52 (1999)
	1998
3		Jun Zhu, Jun S. Liu, Charles E. Lawrence: Bayesian adaptive sequence alignment algorithms. Bioinformatics 14(1): 25-39 (1998)
	1997
2		Jun Zhu, Jun S. Liu, Charles E. Lawrence: Bayesian Adaptive Alignment and Inference. ISMB 1997: 358-368
	1994
1		Charles E. Lawrence, Stephen F. Altschul, John C. Wootton, Mark S. Boguski, Andrew F. Neuwald, Jun S. Liu: A Gibbs Sampler for the Detection of Subtle Motifs in Multiple Sequences. HICSS (5) 1994: 245-254

Coauthor Index

1	Stephen F. Altschul	[1]
2	Sentil Balaji	[41]
3	Serafim Batzoglou	[15]
4	Mark S. Boguski	[1]
5	Douglas L. Brutlag	[6] [9] [15]
6	Liming Cai	[22]
7	Dongsheng Che	[22] [35]
8	Rong Chen	[7] [10] [11]
9	Ting Chen	[12] [24]
10	Rajesh Chowdhary	[37] [41]
11	Jason Cong	[5] [8]
12	Erin M. Conlon	[26]
13	Xiaodan Fan	[30]
14	Hui Ge	[33] [36]
15	Gopi Goswami	[28]
16	Jiajun Gu	[31]
17	Lei Guo	[29]
18	Lyndsay N. Harris	[27]
19	Pengyu Hong	[23]
20	Ming Hu	[42]
21	Haiyan Huang	[16]
22	James D. Iglehart	[27]
23	Shane T. Jensen	[18] [21] [22] [35]
24	Bo Jiang	[40]
25	Hosung Kang	[13]
26	Ming-Chih J. Kao	[16]
27	Tianming Kong	[5] [8]
28	Charles E. Lawrence	[1] [2] [3] [4]
29	Hon-chiu E. Leung	[27]
30	Guojun Li	[35]
31	Faming Liang	[5] [8]
32	Hui Liu	[39]
33	Kesheng Liu	[36]
34	X. Liu	[9]
35	X. Shirley Liu	[15] [23]
36	Yueyi Liu	[15]
37	Xin Lu	[13] [14] [23] [27]
38	Ping Ma	[20]
39	Charles Mcclendon	[41]
40	Alexander Miron	[27]
41	Patrycja Vasilyev Missiuro	[33] [36]
42	Andrew F. Neuwald	[1] [19]
43	Tianhua Niu	[13]
44	Zhaohui S. Qin	[12] [13] [14] [24] [42]
45	Brian C. Ross	[33] [36]
46	Eric E. Schadt	[30] [38]
47	Scott C. Schmidler	[6]
48	Lei Shen	[21] [29]
49	Qian Shi	[27]
50	Joon J. Song	[26]
51	Sira Sriswasdi	[33]
52	Fengzhu Sun	[12] [24]
53	Hanchang Sun	[39]
54	Jeremy M. G. Taylor	[42]
55	Xiaodong Wang	[7] [10] [11]
56	Michael S. Waterman	[12] [24]
57	Liping Wei	[15]
58	Wing Hung Wong	[5] [8] [16] [23] [27]
59	John C. Wootton	[1]
60	Yibo Wu	[39]
61	Hongwei Xie	[39]
62	Dongmin Xu	[5] [8]
63	Xiu-qin Xu	[27]
64	Ying Xu	[35]
65	Guo-Cheng Yuan	[32] [34]
66	Yuan Yuan	[29] [39]
67	Peng Zeng	[20]
68	Jinfeng Zhang	[25] [37] [41]
69	Kui Zhang	[12] [24]
70	Wei Zhang	[38]
71	Wen Zhang	[14]
72	Xuegong Zhang	[27]
73	Guoyan Zhao	[36]
74	Wenxuan Zhong	[20]
75	Qing Zhou	[17] [23]
76	Xianghong Jasmine Zhou	[16]
77	Jun Zhu	[2] [3] [30] [38]
78	Michael Yu Zhu	[20]
79	Yu Zhu	[42]
80	Lihua Zou	[33] [36]

Colors in the list of coauthors

Last update Sun Jun 3 16:06:10 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page