 | 2011 |
| 16 |  | Tzong-Yi Lee,
Neil Arvin Bretaña,
Cheng-Tsung Lu:
PlantPhos: using Maximal Dependence Decomposition to Identify Plant Phosphorylation Sites with Substrate Site Specificity.
BMC Bioinformatics 12: 261 (2011) |
| 15 |  | Justin Bo-Kai Hsu,
Chih-Min Chiu,
Sheng-Da Hsu,
Wei-Yun Huang,
Chia-Hung Chien,
Tzong-Yi Lee,
Hsien-Da Huang:
miRTar: an integrated system for identifying miRNA-target interactions in Human.
BMC Bioinformatics 12: 300 (2011) |
| 14 |  | Shu-An Chen,
Yu-Yen Ou,
Tzong-Yi Lee,
M. Michael Gromiha:
Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties.
Bioinformatics 27(15): 2062-2067 (2011) |
| 13 |  | Tzong-Yi Lee,
Zong-Qing Lin,
Sheng-Jen Hsieh,
Neil Arvin Bretaña,
Cheng-Tsung Lu:
Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences.
Bioinformatics [ISMB/ECCB] 27(13): 1780-1787 (2011) |
| 12 |  | Cheng-Tsung Lu,
Shu-An Chen,
Neil Arvin Bretaña,
Tzu-Hsiu Cheng,
Tzong-Yi Lee:
Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites.
Journal of Computer-Aided Molecular Design 25(10): 987-995 (2011) |
| 11 |  | Tzong-Yi Lee,
Justin Bo-Kai Hsu,
Wen-Chi Chang,
Hsien-Da Huang:
RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans.
Nucleic Acids Research 39(Database-Issue): 777-787 (2011) |
| 2010 |
| 10 |  | Shu-An Chen,
Tzong-Yi Lee,
Yu-Yen Ou:
Incorporating significant amino acid pairs to identify O-linked glycosylation sites on transmembrane proteins and non-transmembrane proteins.
BMC Bioinformatics 11: 536 (2010) |
| 9 |  | Tzong-Yi Lee,
Justin Bo-Kai Hsu,
Feng-Mao Lin,
Wen-Chi Chang,
Po-Chiang Hsu,
Hsien-Da Huang:
N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites.
Journal of Computational Chemistry 31(15): 2759-2771 (2010) |
| 2009 |
| 8 |  | Wen-Chi Chang,
Tzong-Yi Lee,
Dray-Ming Shien,
Justin Bo-Kai Hsu,
Jorng-Tzong Horng,
Po-Chiang Hsu,
Ting-Yuan Wang,
Hsien-Da Huang,
Rong-Long Pan:
Incorporating support vector machine for identifying protein tyrosine sulfation sites.
Journal of Computational Chemistry 30(15): 2526-2537 (2009) |
| 7 |  | Dray-Ming Shien,
Tzong-Yi Lee,
Wen-Chi Chang,
Justin Bo-Kai Hsu,
Jorng-Tzong Horng,
Po-Chiang Hsu,
Ting-Yuan Wang,
Hsien-Da Huang:
Incorporating structural characteristics for identification of protein methylation sites.
Journal of Computational Chemistry 30(9): 1532-1543 (2009) |
| 2007 |
| 6 |  | Yung-Hao Wong,
Tzong-Yi Lee,
Han-Kuen Liang,
Chia-Mao Huang,
Ting-Yuan Wang,
Yi-Huan Yang,
Chia-Huei Chu,
Hsien-Da Huang,
Ming-Tat Ko,
Jenn-Kang Hwang:
KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns.
Nucleic Acids Research 35(Web-Server-Issue): 588-594 (2007) |
| 2006 |
| 5 |  | Tzong-Yi Lee,
Jorng-Tzong Horng,
Hsueh-Fen Juan,
Hsien-Da Huang,
Li-Cheng Wu,
Meng-Feng Tsai,
Hsuan-Cheng Huang:
An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints.
Journal of Computational Chemistry 27(9): 1020-1032 (2006) |
| 4 |  | Tzong-Yi Lee,
Hsien-Da Huang,
Jui-Hung Hung,
Hsi-Yuan Huang,
Yuh-Shyong Yang,
Tzu-Hao Wang:
dbPTM: an information repository of protein post-translational modification.
Nucleic Acids Research 34(Database-Issue): 622-627 (2006) |
| 3 |  | Jui-Hung Hung,
Hsien-Da Huang,
Tzong-Yi Lee:
ProKware: integrated software for presenting protein structural properties in protein tertiary structures.
Nucleic Acids Research 34(Web-Server-Issue): 89-94 (2006) |
| 2005 |
| 2 |  | Hsien-Da Huang,
Tzong-Yi Lee,
Shih-Wei Tzeng,
Li-Cheng Wu,
Jorng-Tzong Horng,
Ann-Ping Tsou,
Kuan-Tsae Huang:
Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites.
Journal of Computational Chemistry 26(10): 1032-1041 (2005) |
| 1 |  | Hsien-Da Huang,
Tzong-Yi Lee,
Shih-Wei Tzeng,
Jorng-Tzong Horng:
KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites.
Nucleic Acids Research 33(Web-Server-Issue): 226-229 (2005) |