Jens Lagergren

	2011
51		Ali Tofigh, Erik Sjlund, Mattias Höglund, Jens Lagergren: A Global Structural EM Algorithm for a Model of Cancer Progression. NIPS 2011: 163-171
50		Ali Tofigh, Michael T. Hallett, Jens Lagergren: Simultaneous Identification of Duplications and Lateral Gene Transfers. IEEE/ACM Trans. Comput. Biology Bioinform. 8(2): 517-535 (2011)
	2010
49		Mats Ensterö, Örjan Åkerborg, Daniel Lundin, Bei Wang, Terrence S. Furey, Marie Öhman, Jens Lagergren: A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins. BMC Bioinformatics 11: 6 (2010)
	2009
48		Lars Arvestad, Jens Lagergren, Bengt Sennblad: The gene evolution model and computing its associated probabilities. J. ACM 56(2): (2009)
47		Isaac Elias, Jens Lagergren: Fast neighbor joining. Theor. Comput. Sci. 410(21-23): 1993-2000 (2009)
	2008
46		Keith A. Crandall, Jens Lagergren: Algorithms in Bioinformatics, 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings Springer 2008
	2007
45		Isaac Elias, Jens Lagergren: Fast computation of distance estimators. BMC Bioinformatics 8: (2007)
44		Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglund Sonnhammer, Jens Lagergren, Lars Arvestad: primetv: a viewer for reconciled trees. BMC Bioinformatics 8: (2007)
43		Samuel A. Andersson, Jens Lagergren: Motif Yggdrasil: Sampling Sequence Motifs from a Tree Mixture Model. Journal of Computational Biology 14(5): 682-697 (2007)
	2006
42		Samuel A. Andersson, Jens Lagergren: Motif Yggdrasil: Sampling from a Tree Mixture Model. RECOMB 2006: 458-472
41		Marcus Hjelm, Mattias Höglund, Jens Lagergren: New Probabilistic Network Models and Algorithms for Oncogenesis. Journal of Computational Biology 13(4): 853-865 (2006)
40		Örjan Svensson, Lars Arvestad, Jens Lagergren: Genome-Wide Survey for Biologically Functional Pseudogenes. PLoS Computational Biology 2(5): (2006)
39		David Bryant, Jens Lagergren: Compatibility of unrooted phylogenetic trees is FPT. Theor. Comput. Sci. 351(3): 296-302 (2006)
	2005
38		Jens Lagergren: Comparative Genomics, RECOMB 2004 International Workshop, RCG 2004, Bertinoro, Italy, October 16-19, 2004, Revised Selected Papers Springer 2005
37		Isaac Elias, Jens Lagergren: Fast Neighbor Joining. ICALP 2005: 1263-1274
	2004
36		Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad: Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. RECOMB 2004: 326-335
35		Michael T. Hallett, Jens Lagergren, Ali Tofigh: Simultaneous identification of duplications and lateral transfers. RECOMB 2004: 347-356
34		Louigi Addario-Berry, Benny Chor, Michael T. Hallett, Jens Lagergren, Alessandro Panconesi, Todd Wareham: Ancestral Maximum Likelihood of Evolutionary Trees Is Hard. J. Bioinformatics and Computational Biology 2(2): 257-272 (2004)
33		Wynand Alkema, Öjvind Johansson, Jens Lagergren, Wyeth W. Wasserman: MSCAN: identification of functional clusters of transcription factor binding sites. Nucleic Acids Research 32(Web-Server-Issue): 195-198 (2004)
32		Lars Ivansson, Jens Lagergren: Algorithms for RH Mapping: New Ideas and Improved Analysis. SIAM J. Comput. 34(1): 89-108 (2004)
	2003
31		Öjvind Johansson, Wynand Alkema, Wyeth W. Wasserman, Jens Lagergren: Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm. ISMB (Supplement of Bioinformatics) 2003: 169-176
30		Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad: Bayesian gene/species tree reconciliation and orthology analysis using MCMC. ISMB (Supplement of Bioinformatics) 2003: 7-15
29		Louigi Addario-Berry, Michael T. Hallett, Jens Lagergren: Towards Identifying Lateral Gene Transfer Events. Pacific Symposium on Biocomputing 2003: 279-290
28		Louigi Addario-Berry, Benny Chor, Michael T. Hallett, Jens Lagergren, Alessandro Panconesi, Todd Wareham: Ancestral Maximum Likelihood of Evolutionary Trees Is Hard. WABI 2003: 202-215
27		Johan Håstad, Lars Ivansson, Jens Lagergren: Fitting points on the real line and its application to RH mapping. J. Algorithms 49(1): 42-62 (2003)
26		David Fernández-Baca, Jens Lagergren: A Polynomial-Time Algorithm for Near-Perfect Phylogeny. SIAM J. Comput. 32(5): 1115-1127 (2003)
	2002
25		Jens Lagergren: Combining polynomial running time and fast convergence for the disk-covering method. J. Comput. Syst. Sci. 65(3): 481-493 (2002)
	2001
24		Michael T. Hallett, Jens Lagergren: Efficient algorithms for lateral gene transfer problems. RECOMB 2001: 149-156
	2000
23		Michael T. Hallett, Jens Lagergren: Hunting for Functionally Analogous Genes. FSTTCS 2000: 465-476
22		Michael T. Hallett, Jens Lagergren: New algorithms for the duplication-loss model. RECOMB 2000: 138-146
	1999
21		Jens Lagergren, Peter Bro Miltersen: Guest Editors' Foreword. Nord. J. Comput. 6(2): 135-136 (1999)
	1998
20		Johan Håstad, Lars Ivansson, Jens Lagergren: Fitting Points on the Real Line and Its Application to RH Mapping. ESA 1998: 465-476
19		David Fernández-Baca, Jens Lagergren: On the Approximability of the Steiner Tree Problem in Phylogeny. Discrete Applied Mathematics 88(1-3): 129-145 (1998)
18		Viggo Kann, Jens Lagergren, Alessandro Panconesi: Approximate Max k-Cut with Subgraph Guarantee. Inf. Process. Lett. 65(3): 145-150 (1998)
17		Jens Lagergren: Upper Bounds on the Size of Obstructions and Intertwines. J. Comb. Theory, Ser. B 73(1): 7-40 (1998)
	1997
16		Viggo Kann, Sanjeev Khanna, Jens Lagergren, Alessandro Panconesi: On the Hardness of Approximating Max k-Cut and its Dual. Chicago J. Theor. Comput. Sci. 1997: (1997)
	1996
15		David Fernández-Baca, Jens Lagergren: A Polynomial-Time Algorithm for Near-Perfect Phylogeny. ICALP 1996: 670-680
14		David Fernández-Baca, Jens Lagergren: On the Approximability of the Steiner Tree Problem in Phylogeny. ISAAC 1996: 65-74
13		Viggo Kann, Sanjeev Khanna, Jens Lagergren, Alessandro Panconesi: On the Hardness of Approximating Max k-Cut and Its Dual. ISTCS 1996: 61-67
12		Jens Lagergren: Hypothesis Testing in Perfect Phylogeny for a Bounded Number of Characters. STACS 1996: 605-616
11		Viggo Kann, Jens Lagergren, Alessandro Panconesi: Approximability of Maximum Splitting of k-Sets and Some Other Apx-Complete Problems. Inf. Process. Lett. 58(3): 105-110 (1996)
10		Jens Lagergren: Efficient Parallel Algorithms for Graphs of Bounded Tree-Width. J. Algorithms 20(1): 20-44 (1996)
9		Bruno Courcelle, Jens Lagergren: Equivalent Definitions of Recognizability for Sets of Graphs of Bounded Tree-Width. Mathematical Structures in Computer Science 6(2): 141-165 (1996)
	1994
8		Jens Lagergren: The Size of an Interwine. ICALP 1994: 520-531
7		Jens Lagergren: The Nonexistence of Reduction Rules Giving an Embedding into a K-tree. Discrete Applied Mathematics 54(2-3): 219-223 (1994)
	1993
6		Bruno Courcelle, Jens Lagergren: Recognizable Sets of Graphs of Bounded Tree-Width. Dagstuhl Seminar on Graph Transformations in Computer Science 1993: 138-152
	1991
5		Jens Lagergren: An upper bound on the size of an obstruction. Graph Structure Theory 1991: 601-622
4		Jens Lagergren, Stefan Arnborg: Finding Minimal Forbidden Minors Using a Finite Congruence. ICALP 1991: 532-543
3		Stefan Arnborg, Jens Lagergren, Detlef Seese: Easy Problems for Tree-Decomposable Graphs. J. Algorithms 12(2): 308-340 (1991)
	1990
2		Jens Lagergren: Efficient Parallel Algorithms for Tree-Decomposition and Related Problems FOCS 1990: 173-182
	1988
1		Stefan Arnborg, Jens Lagergren, Detlef Seese: Problems Easy for Tree-Decomposable Graphs (Extended Abstract). ICALP 1988: 38-51

Coauthor Index

1	Louigi Addario-Berry	[28] [29] [34]
2	Örjan Åkerborg	[49]
3	Wynand Alkema	[31] [33]
4	Samuel A. Andersson	[42] [43]
5	Stefan Arnborg	[1] [3] [4]
6	Lars Arvestad	[30] [36] [40] [44] [48]
7	David Bryant	[39]
8	Benny Chor	[28] [34]
9	Bruno Courcelle	[6] [9]
10	Keith A. Crandall	[46]
11	Isaac Elias	[37] [45] [47]
12	Mats Ensterö	[49]
13	David Fernández-Baca	[14] [15] [19] [26]
14	Terrence S. Furey	[49]
15	Michael T. Hallett	[22] [23] [24] [28] [29] [34] [35] [50]
16	Johan Håstad	[20] [27]
17	Marcus Hjelm	[41]
18	Mattias Höglund	[41] [51]
19	Lars Ivansson	[20] [27] [32]
20	Öjvind Johansson	[31] [33]
21	Viggo Kann	[11] [13] [16] [18]
22	Sanjeev Khanna	[13] [16]
23	Daniel Lundin	[49]
24	Peter Bro Miltersen	[21]
25	Marie Öhman	[49]
26	Alessandro Panconesi	[11] [13] [16] [18] [28] [34]
27	Eva Schreil	[44]
28	Detlef Seese	[1] [3]
29	Bengt Sennblad	[30] [36] [44] [48]
30	Erik Sjlund	[51]
31	Ann-Charlotte Berglund Sonnhammer (Ann-Charlotte Berglund)	[30] [36] [44]
32	Örjan Svensson	[40]
33	Ali Tofigh	[35] [50] [51]
34	Bei Wang	[49]
35	Todd Wareham (Harold T. Wareham)	[28] [34]
36	Wyeth W. Wasserman	[31] [33]

Colors in the list of coauthors

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