Stefan Kurtz

	2012
37		Sascha Steinbiss, Stefan Kurtz: A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences. IEEE/ACM Trans. Comput. Biology Bioinform. 9(2): 345-357 (2012)
	2011
36		Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebastian Will, Michael Beckstette: Structator: fast index-based search for RNA sequence-structure patterns. BMC Bioinformatics 12: 214 (2011)
35		Malik Alawi, Stefan Kurtz, Michael Beckstette: CASSys: an integrated software-system for the interactive analysis of ChIP-seq data. J. Integrative Bioinformatics 8(2): (2011)
	2009
34		Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz: Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinformatics 25(24): 3251-3258 (2009)
33		Sascha Steinbiss, Gordon Gremme, Christin Schärfer, Malte Mader, Stefan Kurtz: AnnotationSketch: a genome annotation drawing library. Bioinformatics 25(4): 533-534 (2009)
32		Steve Hoffmann, Christian Otto, Stefan Kurtz, Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller: Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures. PLoS Computational Biology 5(9): (2009)
	2008
31		David Ellinghaus, Stefan Kurtz, Ute Willhoeft: LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons. BMC Bioinformatics 9: (2008)
30		Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: CoCoNUT: an efficient system for the comparison and analysis of genomes. BMC Bioinformatics 9: (2008)
29		Julia Herold, Stefan Kurtz, Robert Giegerich: Efficient computation of absent words in genomic sequences. BMC Bioinformatics 9: (2008)
28		Enno Ohlebusch, Stefan Kurtz: Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences. Journal of Computational Biology 15(4): 357-377 (2008)
	2007
27		Stefan Gräf, Fiona G. G. Nielsen, Stefan Kurtz, Martijn A. Huynen, Ewan Birney, Henk Stunnenberg, Paul Flicek: Optimized design and assessment of whole genome tiling arrays. ISMB/ECCB (Supplement of Bioinformatics) 2007: 195-204
26		Fiona G. G. Nielsen, Stefan Gräf, Xinmin Zhang, Stefan Kurtz, Sergei Denissov, Roland Green, Ewan Birney, Paul Flicek, Martijn A. Huynen, Henk Stunnenberg: Optimising oligonucleotide array design for ChIP-on-chip. BMC Bioinformatics 8(S-8): (2007)
	2006
25		Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz: Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinformatics 7: 389 (2006)
	2005
24		Andrew E. Torda, Stefan Kurtz, Matthias Rarey: Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, Germany, October 5-7, 2005 GI 2005
23		Gordon Gremme, Volker Brendel, Michael E. Sparks, Stefan Kurtz: Engineering a software tool for gene structure prediction in higher organisms. Information & Software Technology 47(15): 965-978 (2005)
	2004
22		Michael Beckstette, Dirk Strothmann, Robert Homann, Robert Giegerich, Stefan Kurtz: PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. German Conference on Bioinformatics 2004: 53-64
21		Jomuna V. Choudhuri, Chris Schleiermacher, Stefan Kurtz, Robert Giegerich: GenAlyzer: interactive visualization of sequence similarities between entire genomes. Bioinformatics 20(12): 1964-1965 (2004)
20		Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: Replacing suffix trees with enhanced suffix arrays. J. Discrete Algorithms 2(1): 53-86 (2004)
19		Jan Krüger, Alexander Sczyrba, Stefan Kurtz, Robert Giegerich: e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. Nucleic Acids Research 32(Web-Server-Issue): 301-304 (2004)
	2003
18		Matthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz: Local Similarity in RNA Secondary Structures. CSB 2003: 159-168
17		Patrick Chain, Stefan Kurtz, Enno Ohlebusch, Tom Slezak: An Applications-focused Review of Comparative Genomics Tools: Capabilities, Limitations and Future Challenges. Briefings in Bioinformatics 4(2): 105-123 (2003)
16		Alexander Sczyrba, Jan Krüger, Henning Mersch, Stefan Kurtz, Robert Giegerich: RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Research 31(13): 3767-3770 (2003)
15		Robert Giegerich, Stefan Kurtz, Jens Stoye: Efficient implementation of lazy suffix trees. Softw., Pract. Exper. 33(11): 1035-1049 (2003)
	2002
14		Michael Höhl, Stefan Kurtz, Enno Ohlebusch: Efficient multiple genome alignment. ISMB 2002: 312-320
13		Mohamed Ibrahim Abouelhoda, Enno Ohlebusch, Stefan Kurtz: Optimal Exact Strring Matching Based on Suffix Arrays. SPIRE 2002: 31-43
12		Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch: The Enhanced Suffix Array and Its Applications to Genome Analysis. WABI 2002: 449-463
	2001
11		Stefan Gräf, Dirk Strothmann, Stefan Kurtz, Gerhard Steger: HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns. Nucleic Acids Research 29(1): 196-198 (2001)
	2000
10		Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich: Computation and Visualization of Degenerate Repeats in Complete Genomes. ISMB 2000: 228-238
9		Bernhard Balkenhol, Stefan Kurtz: Universal Data Compression Based on the Burrows-Wheeler Transformation: Theory and Practice. IEEE Trans. Computers 49(10): 1043-1053 (2000)
	1999
8		Robert Giegerich, Stefan Kurtz, Jens Stoye: Efficient Implementation of Lazy Suffix Trees. Algorithm Engineering 1999: 30-42
7		Bernhard Balkenhol, Stefan Kurtz, Yuri M. Shtarkov: Modifications of the Burrows and Wheeler Data Compression Algorithm. Data Compression Conference 1999: 188-197
6		Stefan Kurtz, Chris Schleiermacher: REPuter: fast computation of maximal repeats in complete genomes. Bioinformatics 15(5): 426-427 (1999)
5		Stefan Kurtz: Reducing the space requirement of suffix trees. Softw., Pract. Exper. 29(13): 1149-1171 (1999)
	1997
4		Stefan Kurtz, Gene Myers: Estimating the Probability of Approximate Matches. CPM 1997: 52-64
3		Robert Giegerich, Stefan Kurtz: From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction. Algorithmica 19(3): 331-353 (1997)
	1995
2		Robert Giegerich, Stefan Kurtz: A Comparison of Imperative and Purely Functional Suffix Tree Constructions. Sci. Comput. Program. 25(2-3): 187-218 (1995)
	1994
1		Robert Giegerich, Stefan Kurtz: Suffix Trees in the Functional Programming Paradigm. ESOP 1994: 225-240

Coauthor Index

1	Mohamed Ibrahim Abouelhoda	[12] [13] [20] [30]
2	Malik Alawi	[35]
3	Rolf Backofen	[36]
4	Bernhard Balkenhol	[7] [9]
5	Michael Beckstette	[22] [25] [34] [35] [36]
6	Ewan Birney	[26] [27]
7	Volker Brendel	[23]
8	Patrick Chain	[17]
9	Jomuna V. Choudhuri	[21]
10	Sergei Denissov	[26]
11	David Ellinghaus	[31]
12	Paul Flicek	[26] [27]
13	Robert Giegerich	[1] [2] [3] [8] [10] [15] [16] [18] [19] [21] [22] [25] [29] [34]
14	Stefan Gräf	[11] [26] [27]
15	Roland Green	[26]
16	Gordon Gremme	[23] [33]
17	Jörg Hackermüller	[32]
18	Julia Herold	[29]
19	Matthias Höchsmann	[18]
20	Steve Hoffmann	[32]
21	Michael Höhl	[14]
22	Robert Homann	[22] [25] [34]
23	Martijn A. Huynen	[26] [27]
24	Philipp Khaitovich	[32]
25	Jan Krüger	[16] [19]
26	Malte Mader	[33]
27	Henning Mersch	[16]
28	Fernando Meyer	[36]
29	Eugene W. Myers (Gene Myers)	[4]
30	Fiona G. G. Nielsen	[26] [27]
31	Enno Ohlebusch	[10] [12] [13] [14] [17] [20] [28] [30]
32	Christian Otto	[32]
33	Matthias Rarey	[24]
34	Christin Schärfer	[33]
35	Chris Schleiermacher	[6] [10] [21]
36	Alexander Sczyrba	[16] [19]
37	Cynthia M. Sharma	[32]
38	Yuri M. Shtarkov	[7]
39	Tom Slezak	[17]
40	Michael E. Sparks	[23]
41	Peter F. Stadler	[32]
42	Gerhard Steger	[11]
43	Sascha Steinbiss	[33] [37]
44	Jens Stoye	[8] [10] [15]
45	Dirk Strothmann	[11] [22]
46	Henk Stunnenberg	[26] [27]
47	Thomas Töller	[18]
48	Andrew E. Torda	[24]
49	Jörg Vogel	[32]
50	Sebastian Will	[36]
51	Ute Willhoeft	[31]
52	Xinmin Zhang	[26]

Colors in the list of coauthors

Last update Fri Jun 1 15:44:53 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page