Satoru Kuhara

	2010
40		Hirofumi Suzaki, Satoru Kuhara: An Extension Approach for Neural Networks by Introducing a Nearest Neighbor Algorithm in Relative Coordinates. JACIII 14(4): 325-343 (2010)
	2009
39		Yoshinori Tamada, Hiromitsu Araki, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Yuki Tomiyasu, Kaori Yasuda, Ben Dunmore, Deborah Sanders, Sally Humphreys, Cristin G. Print, Stephen D. Charnock-Jones, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano: Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks. Pacific Symposium on Biocomputing 2009: 251-263
	2008
38		Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara: Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations. BIBM 2008: 417-420
	2006
37		Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Kaori Yasuda, Cristin G. Print, Stephen D. Charnock-Jones, Deborah Sanders, Christopher J. Savoie, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano: Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide RNA Expression Profiles. Pacific Symposium on Biocomputing 2006: 559-571
36		Satoshi Niijima, Satoru Kuhara: Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE. BMC Bioinformatics 7: 543 (2006)
35		Satoshi Niijima, Satoru Kuhara: Gene subset selection in kernel-induced feature space. Pattern Recognition Letters 27(16): 1884-1892 (2006)
	2005
34		Osamu Maruyama, Akiko Matsuda, Satoru Kuhara: Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides. International Conference on Computational Science (2) 2005: 911-918
33		Osamu Maruyama, Akiko Matsuda, Satoru Kuhara: Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides. IJBRA 1(4): 429-446 (2005)
32		Satoshi Niijima, Satoru Kuhara: Multiclass Molecular Cancer Classification by Kernel Subspace Methods with Effective Kernel Parameter Selection. J. Bioinformatics and Computational Biology 3(5): 1071-1088 (2005)
	2004
31		Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano: Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks. J. Bioinformatics and Computational Biology 2(1): 77-98 (2004)
30		Yukihiro Maki, Yoriko Takahashi, Yuji Arikawa, Shoji Watanabe, Ken Aoshima, Yukihiro Eguchi, Takanori Ueda, Sachiyo Aburatani, Satoru Kuhara, Masahiro Okamoto: An Integrated Comprehensive Workbench for Inferring Genetic Networks: voyagene. J. Bioinformatics and Computational Biology 2(3): 533-550 (2004)
	2003
29		Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano: Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks. CSB 2003: 104-113
28		Yoshinori Tamada, SunYong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano: Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection. ECCB 2003: 227-236
27		Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano: Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network. J. Bioinformatics and Computational Biology 1(2): 231-252 (2003)
26		Seiya Imoto, Christopher J. Savoie, Sachiyo Aburatani, SunYong Kim, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano: Use of Gene Networks for Identifying and Validating Drug Targets. J. Bioinformatics and Computational Biology 1(3): 459-474 (2003)
25		Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto: Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling. Signal Processing 83(4): 777-788 (2003)
24		Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano: Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model. Theor. Comput. Sci. 1(298): 235-251 (2003)
23		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis. Theor. Comput. Sci. 292(2): 481-495 (2003)
	2002
22		Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano: Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network. CSB 2002: 219-227
21		Osamu Maruyama, Satoru Kuhara, Hideo Bannai, Satoru Miyano, Yoshinori Tamada: Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations. JCIS 2002: 1180-1185
20		Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano: Fast algorithm for extracting multiple unordered short motifs using bit operations. Inf. Sci. 146(1-4): 115-126 (2002)
	2001
19		Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano: Learning Conformation Rules. Discovery Science 2001: 243-257
	2000
18		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: A Simple Greedy Algorithm for Finding Functional Relations: Efficient Implementation and Average Case Anaylsis. Discovery Science 2000: 86-98
17		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function. RECOMB 2000: 8-14
16		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: Inferring qualitative relations in genetic networks and metabolic pathways. Bioinformatics 16(8): 727-734 (2000)
15		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function. Journal of Computational Biology 7(3-4): 331-343 (2000)
	1999
14		Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model. Pacific Symposium on Biocomputing 1999: 17-28
13		Christopher J. Savoie, Nobuhiro Kamikawaji, Takehiko Sasazuki, Satoru Kuhara: Use of Bonsai Decision Trees for the Identification of Potential MHC Class I Peptide Epitope Motifs. Pacific Symposium on Biocomputing 1999: 182-189
12		Hideki Hirakawa, S. Muta, Satoru Kuhara: The hydrophobic cores of proteins predicted by wavelet analysis. Bioinformatics 15(2): 141-148 (1999)
	1998
11		Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano: Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions. SODA 1998: 695-702
	1997
10		Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi: Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique. ISMB 1997: 254-257
9		Y. Tsukamoto, Kyoko Takiguchi, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara: Application of a deductive database system to search for topological and similar three-dimensional structures in protein. Computer Applications in the Biosciences 13(2): 183-190 (1997)
	1995
8		Takayoshi Shoudai, Michael Lappe, Satoru Miyano, Ayumi Shinohara, Takeo Okazaki, Setsuo Arikawa, Tomoyuki Uchida, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara: BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences. ISMB 1995: 359-358
7		Akio Nishikawa, Kenji Satou, Emiko Furuichi, Satoru Kuhara, Kazuo Ushijima: Data Classification Component in a Deductive Database System and Its Application to Protein Structural Analysis. IEICE Transactions 78-D(11): 1377-1387 (1995)
	1994
6		Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Satoru Kuhara, Toshihisa Takagi: Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins. HICSS (5) 1994: 160-170
5		Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa: Development of an integrated Database for Genome Mapping and Nucleotide Sequences. HICSS (5) 1994: 68-76
	1993
4		Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi, Satoru Kuhara: A deductive database system PACADE for analyzing 3-D and secondary structures of protein. Computer Applications in the Biosciences 9(3): 259-265 (1993)
3		Setsuo Arikawa, Satoru Miyano, Ayumi Shinohara, Satoru Kuhara, Yasuhito Mukouchi, Takeshi Shinohara: A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns. New Generation Comput. 11(3): 361-375 (1993)
	1992
2		Setsuo Arikawa, Satoru Kuhara, Satoru Miyano, Yasuhito Mukouchi, Ayumi Shinohara, Takeshi Shinohara: A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns. FGCS 1992: 618-625
	1984
1		Satoru Kuhara, Fumihiro Matsuo, Shouichi Futamura, A. Fujita, Takeshi Shinohara, Toshihisa Takagi, Yasubumi Sakaki: GENAS: a database system for nucleic acid sequence analysis. Nucleic Acids Research 12(1): 89-99 (1984)

Coauthor Index

1	Sachiyo Aburatani	[22] [25] [26] [27] [30]
2	Tatsuya Akutsu	[11] [14] [15] [16] [17] [18] [23] [24]
3	Ken Aoshima	[30]
4	Hiromitsu Araki	[37] [39]
5	Setsuo Arikawa	[2] [3] [8]
6	Yuji Arikawa	[30]
7	Hideo Bannai	[20] [21] [28]
8	Stephen D. Charnock-Jones	[37] [39]
9	Atsushi Doi	[39]
10	Ben Dunmore	[39]
11	Yukihiro Eguchi	[30]
12	A. Fujita	[1]
13	Emiko Furuichi	[4] [6] [7] [9] [10] [19]
14	Shouichi Futamura	[1]
15	Takao Goto	[22] [27] [29] [31]
16	Tomoyuki Higuchi	[29] [31]
17	Hideki Hirakawa	[12] [38]
18	Katsuhisa Horimoto	[25]
19	Sally Humphreys	[39]
20	Seiya Imoto	[22] [26] [27] [28] [29] [31] [37] [39]
21	Yoshiko Ishida	[38]
22	Takao Iwayanagi	[38]
23	Nobuhiro Kamikawaji	[13]
24	Minoru Kanehisa	[5]
25	SunYong Kim	[22] [26] [27] [28]
26	Michael Lappe	[8]
27	Yukihiro Maki	[30]
28	Osamu Maruyama	[11] [19] [20] [21] [24] [33] [34] [38]
29	Akiko Matsuda	[33] [34]
30	Fumihiro Matsuo	[1]
31	Satoru Miyano	[2] [3] [8] [11] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [26] [27] [28] [29] [31] [37] [39]
32	Yasuhito Mukouchi	[2] [3]
33	S. Muta	[12]
34	Masao Nagasaki	[39]
35	Yukiko Nakanishi	[39]
36	Satoshi Niijima	[32] [35] [36]
37	Akio Nishikawa	[7]
38	Masahiro Okamoto	[30]
39	Takeo Okazaki	[8]
40	Toshihide Ono	[10]
41	Jun Otomo	[38]
42	Cristin G. Print	[37] [39]
43	Yasubumi Sakaki	[1]
44	Deborah Sanders	[37] [39]
45	Takehiko Sasazuki	[13]
46	Kenji Satou	[4] [6] [7] [9] [10]
47	Christopher J. Savoie	[13] [26] [37]
48	Shinichi Shimozono	[8]
49	Ayumi Shinohara	[2] [3] [8]
50	Takeshi Shinohara	[1] [2] [3] [8]
51	Takayoshi Shoudai	[8] [19]
52	Hirofumi Suzaki	[40]
53	Takahiko Suzuki	[5]
54	Toshihisa Takagi	[1] [4] [5] [6] [9] [10]
55	Yoriko Takahashi	[30]
56	Shizu Takeda	[38]
57	Kyoko Takiguchi	[4] [6] [9]
58	Yoshinori Tamada	[20] [21] [28] [37] [39]
59	Kousuke Tashiro	[22] [26] [27] [28] [29] [31] [37] [39]
60	Hiroyuki Toh	[25]
61	Yuki Tomiyasu	[39]
62	Y. Tsukamoto	[9]
63	Tomoyuki Uchida	[8]
64	Takanori Ueda	[30]
65	Kazuo Ushijima	[7]
66	Shoji Watanabe	[30]
67	Yoshihisa Yamamura	[10]
68	Kaori Yasuda	[37] [39]

Colors in the list of coauthors

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