 | 2012 |
| 8 |  | Kun Liang,
Sündüz Keles:
Detecting differential binding of transcription factors with ChIP-seq.
Bioinformatics 28(1): 121-122 (2012) |
| 2011 |
| 7 |  | Dongjun Chung,
Sündüz Keles:
eQTL Mapping for Functional Classes of Saccharomyces cerevisiae Genes with Multivariate Sparse Partial Least Squares Regression.
Handbook of Statistical Bioinformatics 2011: 283-298 |
| 6 |  | Dongjun Chung,
Pei Fen Kuan,
Bo Li,
Rajendran Sanalkumar,
Kun Liang,
Emery H. Bresnick,
Colin N. Dewey,
Sündüz Keles:
Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data.
PLoS Computational Biology 7(7): (2011) |
| 2008 |
| 5 |  | Pei Fen Kuan,
Hyonho Chun,
Sündüz Keles:
CMARRT: A Tool of Analysis of CHIP-chip Data from Tiling Arrays by Incorporating the Correlation Structure.
Pacific Symposium on Biocomputing 2008: 515-526 |
| 2006 |
| 4 |  | Sündüz Keles,
Mark J. van der Laan,
Sandrine Dudoit,
Simon E. Cawley:
Multiple Testing Methods For ChIP - Chip High Density Oligonucleotide Array Data.
Journal of Computational Biology 13(3): 579-613 (2006) |
| 2004 |
| 3 |  | Sündüz Keles,
Mark J. van der Laan,
Chris Vulpe:
Regulatory motif finding by logic regression.
Bioinformatics 20(16): 2799-2811 (2004) |
| 2003 |
| 2 |  | Sandrine Dudoit,
Mark J. van der Laan,
Sündüz Keles,
Annette M. Molinaro,
Sandra E. Sinisi,
Siew Leng Teng:
Loss-based estimation with cross-validation: applications to microarray data analysis.
SIGKDD Explorations 5(2): 56-68 (2003) |
| 2002 |
| 1 |  | Sündüz Keles,
Mark J. van der Laan,
Michael B. Eisen:
Identification of regulatory elements using a feature selection method.
Bioinformatics 18(9): 1167-1175 (2002) |