Simon Kasif

	2011
62		Richard J. Roberts, Yi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Revonda M. Pokrzywa, Han-Pil Choi, Lina L. Faller, Jyotsna Guleria, Genevieve Housman, Niels Klitgord, Varun Mazumdar, Mark G. McGettrick, Lais Osmani, Rajeswari Swaminathan, Kevin R. Tao, Stanley Letovsky, Dennis Vitkup, Daniel Segrè, Steven L. Salzberg, Charles DeLisi, Martin Steffen, Simon Kasif: COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. Nucleic Acids Research 39(Database-Issue): 11-14 (2011)
	2010
61		Antonina Mitrofanova, Samantha Kleinberg, Jane Carlton, Simon Kasif, Bud Mishra: Predicting malaria interactome classifications from time-course transcriptomic data along the intraerythrocytic developmental cycle. Artificial Intelligence in Medicine 49(3): 167-176 (2010)
	2009
60		Dikla Dotan-Cohen, Simon Kasif, Avraham A. Melkman: Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clustering. Bioinformatics 25(14): 1789-1795 (2009)
59		Peter J. Park, Sek Won Kong, Toma Tebaldi, Weil R. Lai, Simon Kasif, Isaac S. Kohane: Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance. Bioinformatics 25(23): 3121-3127 (2009)
	2008
58		Antonina Mitrofanova, Samantha Kleinberg, Jane Carlton, Simon Kasif, Bud Mishra: Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic Profiles. BIBM 2008: 278-283
57		Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, David Gold, Eric D. Kolaczyk: Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction. BIBM 2008: 411-416
56		Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, Eric D. Kolaczyk: Integration of relational and hierarchical network information for protein function prediction. BMC Bioinformatics 9: (2008)
55		John H. Reif, Simon Kasif, Deepak Sherlekar: Formula dissection: A parallel algorithm for constraint satisfaction. Computers & Mathematics with Applications 55(6): 1170-1177 (2008)
	2007
54		Dikla Dotan-Cohen, Avraham A. Melkman, Simon Kasif: Hierarchical tree snipping: clustering guided by prior knowledge. Bioinformatics 23(24): 3335-3342 (2007)
	2006
53		Noga Alon, Vera Asodi, Charles Cantor, Simon Kasif, John Rachlin: Multi-Node Graphs: A Framework for Multiplexed Biological Assays. Journal of Computational Biology 13(10): 1659-1672 (2006)
	2005
52		Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman: Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings Springer 2005
51		Joseph D. Szustakowski, Simon Kasif, Zhiping Weng: Less is more: towards an optimal universal description of protein folds. ECCB/JBI 2005: 71
50		Yu Zheng, Brian P. Anton, Richard J. Roberts, Simon Kasif: Phylogenetic detection of conserved gene clusters in microbial genomes. BMC Bioinformatics 6: 243 (2005)
49		John Rachlin, Chunming Ding, Charles Cantor, Simon Kasif: MuPlex: multi-objective multiplex PCR assay design. Nucleic Acids Research 33(Web-Server-Issue): 544-547 (2005)
48		Chang-Jiun Wu, Simon Kasif: GEMS: a web server for biclustering analysis of expression data. Nucleic Acids Research 33(Web-Server-Issue): 596-599 (2005)
	2004
47		Nathan O. Stitziel, T. Andrew Binkowski, Yan Yuan Tseng, Simon Kasif, Jie Liang: topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association. Nucleic Acids Research 32(Database-Issue): 520-522 (2004)
46		Noga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov: Learning a Hidden Matching. SIAM J. Comput. 33(2): 487-501 (2004)
	2003
45		Stanley Letovsky, Simon Kasif: Predicting protein function from protein/protein interaction data: a probabilistic approach. ISMB (Supplement of Bioinformatics) 2003: 197-204
44		T. M. Murali, Simon Kasif: Extracting Conserved Gene Expression Motifs from Gene Expression Data. Pacific Symposium on Biocomputing 2003: 77-88
43		Jie Wu, Simon Kasif, Charles DeLisi: Identification of functional links between genes using phylogenetic profiles. Bioinformatics 19(12): 1524-1530 (2003)
42		Yang Su, T. M. Murali, Vladimir Pavlovic, Michael Schaffer, Simon Kasif: RankGene: identification of diagnostic genes based on expression data. Bioinformatics 19(12): 1578-1579 (2003)
	2002
41		Noga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov: Learning a Hidden Matching. FOCS 2002: 197-
40		Vladimir Pavlovic, Ashutosh Garg, Simon Kasif: A Bayesian framework for combining gene predictions. Bioinformatics 18(1): 19-27 (2002)
	2001
39		Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow: An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB 2001: 22-30
	2000
38		Deyou Cai, Arthur L. Delcher, Ben Kao, Simon Kasif: Modeling splice sites with Bayes networks. Bioinformatics 16(2): 152-158 (2000)
	1998
37		Simon Kasif, Steven Salzberg, David L. Waltz, John Rachlin, David W. Aha: A Probabilistic Framework for Memory-Based Reasoning. Artif. Intell. 104(1-2): 287-311 (1998)
	1997
36		Simon Kasif: Towards a Constraint-Based Engineering Framework for Algorithm Design and Application. Constraints 2(1): 75-82 (1997)
	1996
35		Truxton Fulton, Simon Kasif, Steven Salzberg, David L. Waltz: Local Induction of Decision Trees: Towards Interactive Data Mining. KDD 1996: 14-19
34		Simon Kasif: Towards a Constraint-Based Engineering Framework for Algorithm Design and Application. ACM Comput. Surv. 28(4es): 66 (1996)
33		Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl: Logarithmic-Time Updates and Queries in Probabilistic Networks CoRR cs.AI/9602102: (1996)
32		Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl: Logarithmic-Time Updates and Queries in Probabilistic Networks. J. Artif. Intell. Res. (JAIR) 4: 37-59 (1996)
31		David G. Heath, Simon Kasif, S. Rao Kosaraju, Steven Salzberg, Gregory F. Sullivan: Learning nested concept classes with limited storage. J. Exp. Theor. Artif. Intell. 8(2): 129-147 (1996)
	1995
30		Truxton Fulton, Simon Kasif, Steven Salzberg: Efficient Algorithms for Finding Multi-way Splits for Decision Trees. ICML 1995: 244-251
29		Arthur L. Delcher, Adam J. Grove, Simon Kasif, Judea Pearl: Logarithmic-Time Updates and Queries in Probabilistic Networks. UAI 1995: 116-124
28		David L. Waltz, Simon Kasif: On Reasoning From Data. ACM Comput. Surv. 27(3): 356-359 (1995)
27		Arthur L. Delcher, Simon Kasif: Term Matching on a Mesh-Connected Array of Processors. Ann. Math. Artif. Intell. 14(2-4): 177-186 (1995)
26		Steven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif: Best-Case Results for Nearest-Neighbor Learning. IEEE Trans. Pattern Anal. Mach. Intell. 17(6): 599-608 (1995)
	1994
25		Jonathan Bright, Simon Kasif, Lewis Stiller: Exploiting Algebraic Structure in Parallel State Space Search. AAAI 1994: 1341-1346
24		John Rachlin, Simon Kasif, Steven Salzberg, David W. Aha: Towards a Better Understanding of Memory-based Reasoning Systems. ICML 1994: 242-250
23		Simon Kasif, Arthur L. Delcher: Local Consistency in Parallel Constraint Satisfaction Networks. Artif. Intell. 69(1-2): 307-327 (1994)
22		Sreerama K. Murthy, Simon Kasif, Steven Salzberg: A System for Induction of Oblique Decision Trees. J. Artif. Intell. Res. (JAIR) 2: 1-32 (1994)
	1993
21		Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu: Probabilistic Prediction of Protein Secondary Structure Using Causal Networks (Extended Abstract). AAAI 1993: 316-321
20		Sreerama K. Murthy, Simon Kasif, Steven Salzberg, Richard Beigel: OC1: A Randomized Induction of Oblique Decision Trees. AAAI 1993: 322-327
19		David G. Heath, Simon Kasif, Steven Salzberg: Induction of Oblique Decision Trees. IJCAI 1993: 1002-1007
18		Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu: Protein Secondary-Structure Modeling with Probabilistic Networks. ISMB 1993: 109-117
17		Simon Kasif, Arthur L. Delcher: Local Consistency in Parallel Constraint-Satisfaction Networks. PPCP 1993: 139-145
16		Simon Kasif, Saibal Banerjee, Arthur L. Delcher, Gregory F. Sullivan: Some Results on the Computational Complexity of Symmetric Connectionist Networks. Ann. Math. Artif. Intell. 9(3-4): 327-344 (1993)
15		David G. Heath, Simon Kasif: The Complexity of Finding Minimal Voronoi Covers with Applications to Machine Learning. Comput. Geom. 3: 289-305 (1993)
	1992
14		Arthur L. Delcher, Simon Kasif: Improved Decision-Making in Game Trees: Recovering from Pathology. AAAI 1992: 513-518
13		Arthur L. Delcher, Simon Kasif: Efficient Parallel Term Matching and Anti-Unification. J. Autom. Reasoning 9(3): 391-406 (1992)
	1991
12		Steven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif: Learning with a Helpful Teacher. IJCAI 1991: 705-711
11		David G. Heath, Simon Kasif, S. Rao Kosaraju, Steven Salzberg, Gregory F. Sullivan: Learning Nested Concept Classes with Limited Storage. IJCAI 1991: 777-782
	1990
10		Arthur L. Delcher, Simon Kasif: Efficient Parallel Term Matching and Anti-Unification. ICLP 1990: 355-369
9		Simon Kasif: On the Parallel Complexity of Discrete Relaxation in Constraint Satisfaction Networks. Artif. Intell. 45(3): 275-286 (1990)
	1989
8		Simon Kasif: Parallel Solutions to Constraint Satisfaction Problems. KR 1989: 180-188
7		Arthur L. Delcher, Simon Kasif: Some Results on the Complexity of Exploiting Data Dependency in Parallel Logic Programs. J. Log. Program. 6(3): 229-241 (1989)
	1986
6		Simon Kasif: On the Parallel Complexity of Some Constraint Satisfaction Problems. AAAI 1986: 349-353
5		Simon Kasif: Control and data driven execution of logic programs: A comparison. International Journal of Parallel Programming 15(1): 73-99 (1986)
	1985
4		Simon Kasif, Jack Minker: The Intelligent Channel: A Scheme for Result Sharing in Logic Programs. IJCAI 1985: 29-31
	1983
3		Simon Kasif, Madhur Kohli, Jack Minker: PRISM: A Parallel Inference System for Problem Solving. IJCAI 1983: 544-546
	1982
2		Norbert Eisinger, Simon Kasif, Jack Minker: Logic Programming: A Parallel Approach. ICLP 1982: 71-77
1		Upen S. Chakravarthy, Simon Kasif, Madhur Kohli, Jack Minker, D. Cao: Logic Programming on ZMOB: A Highly Parallel Machine. ICPP 1982: 347-349

Coauthor Index

1	David W. Aha	[24] [37]
2	Noga Alon	[39] [41] [46] [53]
3	Brian P. Anton	[50] [62]
4	Mehmet Serkan Apaydin	[39]
5	Vera Asodi	[53]
6	Saibal Banerjee	[16]
7	Richard Beigel	[20] [39] [41] [46]
8	T. Andrew Binkowski	[47]
9	Jonathan Bright	[25]
10	Deyou Cai	[38]
11	Charles Cantor	[49] [53]
12	D. Cao	[1]
13	Jane Carlton	[58] [61]
14	Upen S. Chakravarthy	[1]
15	Yi-Chien Chang	[62]
16	Han-Pil Choi	[62]
17	Charles DeLisi	[43] [62]
18	Arthur L. Delcher	[7] [10] [12] [13] [14] [16] [17] [18] [21] [23] [26] [27] [29] [32] [33] [38]
19	Chunming Ding	[49]
20	Dikla Dotan-Cohen	[54] [60]
21	Norbert Eisinger	[2]
22	Lina L. Faller	[62]
23	Lance Fortnow	[39]
24	Truxton Fulton	[30] [35]
25	Ashutosh Garg	[40]
26	David Gold	[57]
27	Harry R. Goldberg	[18] [21]
28	Adam J. Grove	[29] [32] [33]
29	Jyotsna Guleria	[62]
30	David G. Heath	[11] [12] [15] [19] [26] [31]
31	Genevieve Housman	[62]
32	William H. Hsu	[18] [21]
33	Zhenjun Hu	[62]
34	Sorin Istrail	[52]
35	Xiaoyu Jiang	[56] [57]
36	Ben Kao (Benjamin C. M. Kao)	[38]
37	Samantha Kleinberg	[58] [61]
38	Niels Klitgord	[62]
39	Isaac S. Kohane	[59]
40	Madhur Kohli	[1] [3]
41	Eric D. Kolaczyk	[56] [57]
42	Sek Won Kong	[59]
43	S. Rao Kosaraju	[11] [31]
44	Weil R. Lai	[59]
45	Stanley Letovsky (Stanley Ian Letovsky)	[45] [62]
46	Jie Liang	[47]
47	Varun Mazumdar	[62]
48	Mark G. McGettrick	[62]
49	Avraham A. Melkman	[54] [60]
50	Jill P. Mesirov	[52]
51	Jack Minker	[1] [2] [3] [4]
52	Bud Mishra (Bhubaneswar Mishra)	[58] [61]
53	Antonina Mitrofanova	[58] [61]
54	Satoru Miyano	[52]
55	T. M. Murali	[42] [44]
56	Sreerama K. Murthy	[20] [22]
57	Naoki Nariai	[56] [57]
58	Lais Osmani	[62]
59	Peter J. Park	[59]
60	Vladimir Pavlovic	[40] [42]
61	Judea Pearl	[29] [32] [33]
62	Pavel A. Pevzner	[52]
63	Revonda M. Pokrzywa	[62]
64	John Rachlin	[24] [37] [49] [53] [62]
65	John H. Reif	[55]
66	Richard J. Roberts	[50] [62]
67	Steven Rudich	[41] [46]
68	Steven Salzberg (Steven L. Salzberg)	[11] [12] [19] [20] [22] [24] [26] [30] [31] [35] [37] [62]
69	Michael Schaffer	[42]
70	Daniel Segrè	[62]
71	Deepak Sherlekar	[55]
72	Martin Steffen	[56] [57] [62]
73	Lewis Stiller	[25]
74	Nathan O. Stitziel	[47]
75	Yang Su	[42]
76	Benny Sudakov	[41] [46]
77	Gregory F. Sullivan	[11] [16] [31]
78	Rajeswari Swaminathan	[62]
79	Joseph D. Szustakowski	[51]
80	Kevin R. Tao	[62]
81	Toma Tebaldi	[59]
82	Yan Yuan Tseng	[47]
83	Dennis Vitkup	[62]
84	David L. Waltz	[28] [35] [37]
85	Michael S. Waterman	[52]
86	Zhiping Weng	[51]
87	Chang-Jiun Wu	[48]
88	Jie Wu	[43]
89	Yu Zheng	[50]

Colors in the list of coauthors

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