Misha Kapushesky

	2012
20		Aedín C. Culhane, Markus S. Schröder, Razvan Sultana, Shaita C. Picard, Enzo N. Martinelli, Caroline Kelly, Benjamin Haibe-Kains, Misha Kapushesky, Anne-Alyssa St Pierre, William Flahive, Kermshlise C. Picard, Daniel Gusenleitner, Gerald Papenhausen, Niall O'Connor, Mick Correll, John Quackenbush: GeneSigDB: a manually curated database and resource for analysis of gene expression signatures. Nucleic Acids Research 40(Database-Issue): 1060-1066 (2012)
19		Misha Kapushesky, Tomasz Adamusiak, Tony Burdett, Aedín C. Culhane, Anna Farne, Alexey Filippov, Ele Holloway, Andrey Klebanov, Nataliya Kryvych, Natalja Kurbatova, Pavel Kurnosov, James Malone, Olga Melnichuk, Robert Petryszak, Nikolay Pultsin, Gabriella Rustici, Andrew Tikhonov, Ravensara S. Travillian, Eleanor Williams, Andrey Zorin, Helen E. Parkinson, Alvis Brazma: Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Research 40(Database-Issue): 1077-1081 (2012)
	2011
18		Tomasz Adamusiak, Tony Burdett, Natalja Kurbatova, K. Joeri van der Velde, Niran Abeygunawardena, Despoina Antonakaki, Misha Kapushesky, Helen E. Parkinson, Morris A. Swertz: OntoCAT - simple ontology search and integration in Java, R and REST/JavaScript. BMC Bioinformatics 12: 218 (2011)
17		Natalja Kurbatova, Tomasz Adamusiak, Pavel Kurnosov, Morris A. Swertz, Misha Kapushesky: ontoCAT: an R package for ontology traversal and search. Bioinformatics 27(17): 2468-2470 (2011)
16		Angela Goncalves, Andrew Tikhonov, Alvis Brazma, Misha Kapushesky: A pipeline for RNA-seq data processing and quality assessment. Bioinformatics 27(6): 867-869 (2011)
	2010
15		James Malone, Ele Holloway, Tomasz Adamusiak, Misha Kapushesky, Jie Zheng, Nikolay Kolesnikov, Anna Zhukova, Alvis Brazma, Helen E. Parkinson: Modeling sample variables with an Experimental Factor Ontology. Bioinformatics 26(8): 1112-1118 (2010)
14		Misha Kapushesky, Ibrahim Emam, Ele Holloway, Pavel Kurnosov, Andrey Zorin, James Malone, Gabriella Rustici, Eleanor Williams, Helen E. Parkinson, Alvis Brazma: Gene Expression Atlas at the European Bioinformatics Institute. Nucleic Acids Research 38(Database-Issue): 690-698 (2010)
	2009
13		James Malone, Tomasz Adamusiak, Ele Holloway, Misha Kapushesky, Helen E. Parkinson: Developing an Ontology from the Application Up. OWLED 2009
12		Audrey Kauffmann, Tim F. Rayner, Helen E. Parkinson, Misha Kapushesky, Margus Lukk, Alvis Brazma, Wolfgang Huber: Importing ArrayExpress datasets into R/Bioconductor. Bioinformatics 25(16): 2092-2094 (2009)
11		Helen E. Parkinson, Misha Kapushesky, Nikolay Kolesnikov, Gabriella Rustici, Mohammadreza Shojatalab, Niran Abeygunawardena, Hugo Berube, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Ele Holloway, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Tim F. Rayner, Faisal Ibne Rezwan, Anjan Sharma, Eleanor Williams, Xiangqun Zheng Bradley, Tomasz Adamusiak, Marco Brandizi, Tony Burdett, Richard Coulson, Maria Krestyaninova, Pavel Kurnosov, Eamonn Maguire, Sudeshna Guha Neogi, Philippe Rocca-Serra, Susanna-Assunta Sansone, Nataliya Sklyar, Mengyao Zhao, Ugis Sarkans, Alvis Brazma: ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Research 37(Database-Issue): 868-872 (2009)
	2008
10		Yannick Haudry, Chuang Kee Ong, Laurence Ettwiller, Hugo Berube, Ivica Letunic, Misha Kapushesky, Paul-Daniel Weeber, Xi Wang, Julien Gagneur, Charles Girardot, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen E. M. Furlong, Joachim Wittbrodt, Thorsten Henrich: Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress. APBC 2008: 373-382
9		Yannick Haudry, Hugo Berube, Ivica Letunic, Paul-Daniel Weeber, Julien Gagneur, Charles Girardot, Misha Kapushesky, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen E. M. Furlong, Joachim Wittbrodt, Thorsten Henrich: 4DXpress: a database for cross-species expression pattern comparisons. Nucleic Acids Research 36(Database-Issue): 847-853 (2008)
	2007
8		Helen E. Parkinson, Misha Kapushesky, Mohammadreza Shojatalab, Niran Abeygunawardena, Richard Coulson, Anna Farne, Ele Holloway, N. Kolesnykov, P. Lilja, Margus Lukk, Roby Mani, Tim F. Rayner, Anjan Sharma, E. William, Ugis Sarkans, Alvis Brazma: ArrayExpress - a public database of microarray experiments and gene expression profiles. Nucleic Acids Research 35(Database-Issue): 747-750 (2007)
	2006
7		Jonathon Blake, Christian Schwager, Misha Kapushesky, Alvis Brazma: ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression. Bioinformatics 22(6): 765-767 (2006)
	2005
6		Aurora Torrente, Misha Kapushesky, Alvis Brazma: A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings. Bioinformatics 21(21): 3993-3999 (2005)
5		Ugis Sarkans, Helen E. Parkinson, Gonzalo Garcia Lara, Ahmet Oezcimen, Anjan Sharma, Niran Abeygunawardena, Sergio Contrino, Ele Holloway, Philippe Rocca-Serra, Gaurab Mukherjee, Mohammadreza Shojatalab, Misha Kapushesky, Susanna-Assunta Sansone, Anna Farne, Tim F. Rayner, Alvis Brazma: The ArrayExpress gene expression database: a software engineering and implementation perspective. Bioinformatics 21(8): 1495-1501 (2005)
4		Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Niran Abeygunawardena, Sergio Contrino, Richard Coulson, Anna Farne, Gonzalo Garcia Lara, Ele Holloway, Misha Kapushesky, P. Lilja, Gaurab Mukherjee, Ahmet Oezcimen, Tim F. Rayner, Philippe Rocca-Serra, Anjan Sharma, Susanna-Assunta Sansone, Alvis Brazma: ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Research 33(Database-Issue): 553-555 (2005)
	2004
3		Lev Soinov, Alexander Kanapin, Misha Kapushesky: Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation. WABI 2004: 159-169
2		Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma: Expression Profiler: next generation - an online platform for analysis of microarray data. Nucleic Acids Research 32(Web-Server-Issue): 465-470 (2004)
	2003
1		Alvis Brazma, Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, Susanna-Assunta Sansone: ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Research 31(1): 68-71 (2003)

Coauthor Index

1	Niran Abeygunawardena	[1] [4] [5] [8] [11] [18]
2	Tomasz Adamusiak	[11] [13] [15] [17] [18] [19]
3	Despoina Antonakaki	[18]
4	Detlev Arendt	[9] [10]
5	Hugo Berube	[9] [10] [11]
6	Jonathon Blake	[7]
7	Peer Bork	[9] [10]
8	Xiangqun Zheng Bradley	[11]
9	Marco Brandizi	[11]
10	Alvis Brazma	[1] [2] [4] [5] [6] [7] [8] [9] [10] [11] [12] [14] [15] [16] [19]
11	Tony Burdett	[11] [18] [19]
12	Sergio Contrino	[4] [5]
13	Mick Correll	[20]
14	Richard Coulson	[4] [8] [11]
15	Aedín C. Culhane	[2] [19] [20]
16	Steffen Durinck	[2]
17	Miroslaw Dylag	[11]
18	Ibrahim Emam	[11] [14]
19	Laurence Ettwiller	[10]
20	Anna Farne	[4] [5] [8] [11] [19]
21	Alexey Filippov	[19]
22	William Flahive	[20]
23	Eileen E. M. Furlong	[9] [10]
24	Julien Gagneur	[9] [10]
25	Charles Girardot	[9] [10]
26	Angela Goncalves	[16]
27	Daniel Gusenleitner	[20]
28	Benjamin Haibe-Kains	[20]
29	Yannick Haudry	[9] [10]
30	Thorsten Henrich	[9] [10]
31	Ele Holloway	[1] [4] [5] [8] [11] [13] [14] [15] [19]
32	Wolfgang Huber	[12]
33	Jan Ihmels	[2]
34	Alexander Kanapin	[3]
35	Audrey Kauffmann	[12]
36	Caroline Kelly	[20]
37	Patrick Kemmeren	[1] [2]
38	Andrey Klebanov	[19]
39	Nikolay Kolesnikov	[11] [15]
40	N. Kolesnykov	[8]
41	Christine Körner	[2]
42	Maria Krestyaninova	[11]
43	Nataliya Kryvych	[19]
44	Meelis Kull	[2]
45	Natalja Kurbatova	[17] [18] [19]
46	Pavel Kurnosov	[11] [14] [17] [19]
47	Gonzalo Garcia Lara	[1] [4] [5]
48	Ivica Letunic	[9] [10]
49	P. Lilja	[4] [8]
50	Margus Lukk	[8] [11] [12]
51	Eamonn Maguire	[11]
52	James Malone	[11] [13] [14] [15] [19]
53	Roby Mani	[8] [11]
54	Enzo N. Martinelli	[20]
55	Olga Melnichuk	[19]
56	Gaurab Mukherjee	[4] [5]
57	Sudeshna Guha Neogi	[11]
58	Niall O'Connor	[20]
59	Ahmet Oezcimen	[1] [4] [5]
60	Chuang Kee Ong	[10]
61	Gerald Papenhausen	[20]
62	Helen E. Parkinson	[1] [4] [5] [8] [11] [12] [13] [14] [15] [18] [19]
63	Robert Petryszak	[19]
64	Kermshlise C. Picard	[20]
65	Shaita C. Picard	[20]
66	Anne-Alyssa St Pierre	[20]
67	Ekaterina Pilicheva	[11]
68	Nikolay Pultsin	[19]
69	John Quackenbush	[20]
70	Tim F. Rayner	[4] [5] [8] [11] [12]
71	Faisal Ibne Rezwan	[11]
72	Philippe Rocca-Serra	[1] [4] [5] [11]
73	Gabriella Rustici	[11] [14] [19]
74	Susanna-Assunta Sansone	[1] [4] [5] [11]
75	Ugis Sarkans	[1] [2] [4] [5] [8] [11]
76	Markus S. Schröder	[20]
77	Christian Schwager	[7]
78	Anjan Sharma	[4] [5] [8] [11]
79	Mohammadreza Shojatalab	[1] [4] [5] [8] [11]
80	Nataliya Sklyar	[11]
81	Lev Soinov	[3]
82	Razvan Sultana	[20]
83	Morris A. Swertz	[17] [18]
84	Andrew Tikhonov	[16] [19]
85	Aurora Torrente	[2] [6]
86	Ravensara S. Travillian	[19]
87	K. Joeri van der Velde	[18]
88	Jaak Vilo	[1] [2]
89	Xi Wang	[10]
90	Paul-Daniel Weeber	[9] [10]
91	E. William	[8]
92	Eleanor Williams	[11] [14] [19]
93	Joachim Wittbrodt	[9] [10]
94	Mengyao Zhao	[11]
95	Jie Zheng	[15]
96	Anna Zhukova	[15]
97	Andrey Zorin	[14] [19]

Last update Sat Jun 2 20:57:36 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page