 | 2012 |
| 15 |  | Robert Küffner,
Tobias Petri,
Pegah Tavakkolkhah,
Lukas Windhager,
Ralf Zimmer:
Inferring gene regulatory networks by ANOVA.
Bioinformatics 28(10): 1376-1382 (2012) |
| 2011 |
| 14 |  | Tobias Petri,
Robert Küffner,
Ralf Zimmer:
Experiment Specific Expression Patterns.
RECOMB 2011: 339-354 |
| 13 |  | Ludwig Geistlinger,
Gergely Csaba,
Robert Küffner,
Nicola J. Mulder,
Ralf Zimmer:
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems.
Bioinformatics [ISMB/ECCB] 27(13): 366-373 (2011) |
| 2010 |
| 12 |  | Haroon Naeem,
Robert Küffner,
Gergely Csaba,
Ralf Zimmer:
miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature.
BMC Bioinformatics 11: 135 (2010) |
| 2009 |
| 11 |  | Fabian Birzele,
Gergely Csaba,
Florian Erhard,
Caroline C. Friedel,
Robert Küffner,
Tobias Petri,
Lukas Windhager,
Ralf Zimmer:
Algorithmische Systembiologie mit Petrinetzen - Von qualitativen zu quantitativen Systemmodellen.
Informatik Spektrum 32(4): 310-319 (2009) |
| 2008 |
| 10 |  | Fabian Birzele,
Robert Küffner,
Franziska Meier,
Florian Oefinger,
Christian Potthast,
Ralf Zimmer:
ProSAS: a database for analyzing alternative splicing in the context of protein structures.
Nucleic Acids Research 36(Database-Issue): 63-68 (2008) |
| 2007 |
| 9 |  | Katrin Fundel,
Robert Küffner,
Ralf Zimmer:
RelEx - Relation extraction using dependency parse trees.
Bioinformatics 23(3): 365-371 (2007) |
| 2006 |
| 8 |  | Robert Küffner,
Timo Duchrow,
Katrin Fundel,
Ralf Zimmer:
Characterization of Protein Interactions.
German Conference on Bioinformatics 2006: 64-73 |
| 7 |  | Chad A. Davis,
Fabian Gerick,
Volker Hintermair,
Caroline C. Friedel,
Katrin Fundel,
Robert Küffner,
Ralf Zimmer:
Reliable gene signatures for microarray classification: assessment of stability and performance.
Bioinformatics 22(19): 2356-2363 (2006) |
| 2005 |
| 6 |  | Robert Küffner,
Katrin Fundel,
Ralf Zimmer:
Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts.
ECCB/JBI 2005: 267 |
| 5 |  | Katrin Fundel,
Robert Küffner,
Thomas Aigner,
Ralf Zimmer:
Data Processing Effects on the Interpretation of Microarray Gene Expression Experiments.
German Conference on Bioinformatics 2005: 77-91 |
| 2001 |
| 4 |  | Hartmann J. Genrich,
Robert Küffner,
Klaus Voss:
Executable Petri net models for the analysis of metabolic pathways.
STTT 3(4): 394-404 (2001) |
| 2000 |
| 3 |  | Alexander Zien,
Robert Küffner,
Ralf Zimmer,
Thomas Lengauer:
Analysis of Gene Expression Data with Pathway Scores.
ISMB 2000: 407-417 |
| 2 |  | Robert Küffner,
Ralf Zimmer,
Thomas Lengauer:
Pathway analysis in metabolic databases via differential metabolic display (DMD).
Bioinformatics 16(9): 825-836 (2000) |
| 1999 |
| 1 |  | Robert Küffner,
Ralf Zimmer,
Thomas Lengauer:
Pathway analysis in metabolic databases via differetial metabolic display (DMD).
German Conference on Bioinformatics 1999: 141-147 |