 | 2009 |
| 19 |  | Jan Taubert,
Matthew Hindle,
Artem Lysenko,
Jochen Weile,
Jacob Köhler,
Christopher J. Rawlings:
Linking Life Sciences Data Using Graph-Based Mapping.
DILS 2009: 16-30 |
| 2008 |
| 18 |  | Robert Pesch,
Artem Lysenko,
Matthew Hindle,
Keywan Hassani-Pak,
Ralf Thiele,
Christopher J. Rawlings,
Jacob Köhler,
Jan Taubert:
Graph-based sequence annotation using a data integration approach.
J. Integrative Bioinformatics 5(2): (2008) |
| 17 |  | Rainer Winnenburg,
Martin Urban,
Andrew M. Beacham,
Thomas K. Baldwin,
Sabrina Holland,
Magdalen Lindeberg,
Hilde Hansen,
Christopher J. Rawlings,
Kim E. Hammond-Kosack,
Jacob Köhler:
PHI-base update: additions to the pathogen-host interaction database.
Nucleic Acids Research 36(Database-Issue): 572-576 (2008) |
| 2007 |
| 16 |  | Jan Taubert,
Klaus Peter Sieren,
Matthew Hindle,
Berend Hoekman,
Rainer Winnenburg,
Stephan Philippi,
Christopher J. Rawlings,
Jacob Köhler:
The OXL format for the exchange of integrated datasets.
J. Integrative Bioinformatics 4(3): (2007) |
| 2006 |
| 15 |  | Jacob Köhler,
Katherine Munn,
Alexander Rüegg,
Andre Skusa,
Barry Smith:
Quality control for terms and definitions in ontologies and taxonomies.
BMC Bioinformatics 7: 212 (2006) |
| 14 |  | Jacob Köhler,
Jan Baumbach,
Jan Taubert,
Michael Specht,
Andre Skusa,
Alexander Rüegg,
Christopher J. Rawlings,
Paul Verrier,
Stephan Philippi:
Graph-based analysis and visualization of experimental results with ONDEX.
Bioinformatics 22(11): 1383-1390 (2006) |
| 13 |  | Stephan Philippi,
Jacob Köhler:
Automated Structure Extraction and XML Conversion of Life Science Database Flat Files.
IEEE Transactions on Information Technology in Biomedicine 10(4): 714-721 (2006) |
| 12 |  | Jacob Köhler,
Stephan Philippi,
Michael Specht,
Alexander Rüegg:
Ontology based text indexing and querying for the semantic web.
Knowl.-Based Syst. 19(8): 744-754 (2006) |
| 11 |  | Rainer Winnenburg,
Thomas K. Baldwin,
Martin Urban,
Christopher J. Rawlings,
Jacob Köhler,
Kim E. Hammond-Kosack:
PHI-base: a new database for pathogen host interactions.
Nucleic Acids Research 34(Database-Issue): 459-464 (2006) |
| 2005 |
| 10 |  | Andre Skusa,
Alexander Rüegg,
Jacob Köhler:
Extraction of biological interaction networks from scientific literature.
Briefings in Bioinformatics 6(3): 263-276 (2005) |
| 2004 |
| 9 |  | Barry Smith,
Jacob Köhler,
Anand Kumar:
On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology.
DILS 2004: 79-94 |
| 8 |  | Stephan Philippi,
Jacob Köhler:
Using XML Technology for the Ontology-Based Semantic Integration of Life Science Databases.
IEEE Transactions on Information Technology in Biomedicine 8(2): 154-160 (2004) |
| 7 |  | Jacob Köhler,
Christopher J. Rawlings,
Paul Verrier,
Rowan A. C. Mitchell,
Andre Skusa,
Alexander Rüegg,
Stephan Philippi:
Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalized Data Structures.
In Silico Biology 5: (2004) |
| 2003 |
| 6 |  | Jacob Köhler,
Stephan Philippi,
Matthias Lange:
SEMEDA: ontology based semantic integration of biological databases.
Bioinformatics 19(18): 2420-2427 (2003) |
| 5 |  | Jacob Köhler:
SEMEDA (semantic meta database): ontology based semantic integration of biological databases.
Bielefeld University 2003: 1-140 |
| 2002 |
| 4 |  | Ming Chen,
Andreas Freier,
Jacob Köhler,
Alexander Rüegg:
The biology Petri net markup language.
Promise 2002: 150-161 |
| 3 |  | Jacob Köhler,
Steffen Schulze-Kremer:
The Semantic Metadatabase (SEMEDA): Ontology Based Integration of Federated Molecular Biological Data Sources.
In Silico Biology 2: 21 (2002) |
| 2001 |
| 2 |  | Jacob Köhler,
Steffen Schulze-Kremer:
The Semantic Metadatabase (SEMEDA): Ontology Based Integration of Federated Molecular Biological Data Sources.
German Conference on Bioinformatics 2001: 47-52 |
| 2000 |
| 1 |  | Jacob Köhler,
Matthias Lange,
Ralf Hofestädt,
Steffen Schulze-Kremer:
Logical and Semantic Database Integration.
BIBE 2000: 77-80 |