Steven J. M. Jones

	2012
31		Byron J. Gao, Obi L. Griffith, Martin Ester, Hui Xiong, Qiang Zhao, Steven J. M. Jones: On the Deep Order-Preserving Submatrix Problem: A Best Effort Approach. IEEE Trans. Knowl. Data Eng. 24(2): 309-325 (2012)
	2011
30		Anthony P. Fejes, Alireza Hadj Khodabakhshi, Inanç Birol, Steven J. M. Jones: Human variation database: an open-source database template for genomic discovery. Bioinformatics 27(8): 1155-1156 (2011)
29		Yvonne Y. Li, Jianghong An, Steven J. M. Jones: A Computational Approach to Finding Novel Targets for Existing Drugs. PLoS Computational Biology 7(9): (2011)
	2010
28		Steven J. M. Jones, Janessa Laskin, Yvonne Y. Li, Obi L. Griffith, Jianghong An, Mikhail Bilenky, Yaron S. N. Butterfield, Timothee Cezard, Eric Chuah, Richard Corbett, Anthony P. Fejes, Malachi Griffith, John Yee, Montgomery Martin, Michael Mayo, Nataliya Melnyk, Ryan D. Morin, Trevor J. Pugh, Tesa Severson, Sohrab P. Shah, Margaret Sutcliffe, Angela Tam, Jefferson Terry, Nina Thiessen, Thomas Thomson, Richard Varhol, Thomas Zeng, Yongjun Zhao, Richard A. Moore, David G. Huntsman, Inanç Birol, Martin Hirst, Robert A. Holt, Marco A. Marra: Genomic analysis of a rare human tumor. BMC Bioinformatics 11(S-4): O3 (2010)
27		Nawar Malhis, Steven J. M. Jones: High quality SNP calling using Illumina data at shallow coverage. Bioinformatics 26(8): 1029-1035 (2010)
26		R. T. F. Wong, Stephane Flibotte, Richard Corbett, P. Saeedi, Steven J. M. Jones, Marco A. Marra, Jacqueline E. Schein, Inanç Birol: LaneRuler: Automated Lane Tracking for DNA Electrophoresis Gel Images. IEEE T. Automation Science and Engineering 7(3): 706-708 (2010)
	2009
25		Nawar Malhis, Yaron S. N. Butterfield, Martin Ester, Steven J. M. Jones: Slider - maximum use of probability information for alignment of short sequence reads and SNP detection. Bioinformatics 25(1): 6-13 (2009)
24		Inanç Birol, Shaun D. Jackman, Cydney B. Nielsen, Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Douglas E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones: De novo transcriptome assembly with ABySS. Bioinformatics 25(21): 2872-2877 (2009)
23		Obi L. Griffith, Byron J. Gao, Mikhail Bilenky, Yuliya Prichyna, Martin Ester, Steven J. M. Jones: KiWi: A Scalable Subspace Clustering Algorithm for Gene Expression Analysis CoRR abs/0904.1931: (2009)
22		Cydney B. Nielsen, Shaun D. Jackman, Inanç Birol, Steven J. M. Jones: ABySS-Explorer: Visualizing Genome Sequence Assemblies. IEEE Trans. Vis. Comput. Graph. 15(6): 881-888 (2009)
	2008
21		Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew N. Bainbridge, Steven J. M. Jones: FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology. Bioinformatics 24(15): 1729-1730 (2008)
20		Obi L. Griffith, Stephen Montgomery, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts, Shaun Mahony, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith, Steven M. Gallo, Belinda Giardine, Bart Hooghe, Peter Van Loo, Enrique Blanco, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman, Ross C. Hardison, Casey M. Bergman, Steven J. M. Jones: ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Research 36(Database-Issue): 107-113 (2008)
	2007
19		Matthew N. Bainbridge, René L. Warren, An He, Mikhail Bilenky, Gordon Robertson, Steven J. M. Jones: THOR: targeted high-throughput ortholog reconstructor. Bioinformatics 23(19): 2622-2624 (2007)
18		René L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt: Assembling millions of short DNA sequences using SSAKE. Bioinformatics 23(4): 500-501 (2007)
17		Stephen Montgomery, Obi L. Griffith, Johanna M. Schuetz, Angela Brooks-Wilson, Steven J. M. Jones: A Survey of Genomic Properties for the Detection of Regulatory Polymorphisms. PLoS Computational Biology 3(6): (2007)
	2006
16		Babu Sundaram, Barbara M. Chapman, Bernard Li, Mark Mayo, Asim S. Siddiqui, Steven J. M. Jones: Sun Grid Engine Package for OSCAR - A Google Summer Of Code 2005 Project. HPCS 2006: 41
15		Byron J. Gao, Obi L. Griffith, Martin Ester, Steven J. M. Jones: Discovering significant OPSM subspace clusters in massive gene expression data. KDD 2006: 922-928
14		Peter Ruzanov, Steven J. M. Jones: An interactive tool for visualization of relationships between gene expression profiles. BMC Bioinformatics 7: 193 (2006)
13		Stephen Montgomery, Obi L. Griffith, Monica C. Sleumer, Casey M. Bergman, Misha Bilenky, Erin Pleasance, Y. Prychyna, X. Zhang, Steven J. M. Jones: ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. Bioinformatics 22(5): 637-640 (2006)
12		Yvonne Y. Li, Steven J. M. Jones, Artem Cherkasov: Selective Targeting of Indel-inferred Differences in Spatial Structures of Homologous Proteins. J. Bioinformatics and Computational Biology 4(2): 403-414 (2006)
11		Gordon Robertson, Misha Bilenky, Keven Lin, An He, W. Yuen, M. Dagpinar, Richard Varhol, Kevin Teague, Obi L. Griffith, X. Zhang, Y. Pan, Maik Hassel, Monica C. Sleumer, W. Pan, Erin Pleasance, M. Chuang, H. Hao, Yvonne Y. Li, Neil Robertson, C. Fjell, Bernard Li, Stephen Montgomery, Tamara Astakhova, Jianjun Zhou, Jörg Sander, Asim S. Siddiqui, Steven J. M. Jones: cisRED: a database system for genome-scale computational discovery of regulatory elements. Nucleic Acids Research 34(Database-Issue): 68-73 (2006)
	2005
10		Asim S. Siddiqui, Gordon Robertson, Misha Bilenky, Tamara Astakhova, Obi L. Griffith, Maik Hassel, Keven Lin, Stephen Montgomery, Mehrdad Oveisi, Erin Pleasance, Neil Robertson, Monica C. Sleumer, Kevin Teague, Richard Varhol, Maggie Zhang, Steven J. M. Jones: cis-Regulatory Element Prediction in Mammalian Genomes. CSB Workshops 2005: 203-206
9		Jörg Sander, Raymond T. Ng, Monica C. Sleumer, Man Saint Yuen, Steven J. M. Jones: A methodology for analyzing SAGE libraries for cancer profiling. ACM Trans. Inf. Syst. 23(1): 35-60 (2005)
8		Chris D. Bajdik, Byron Kuo, Shawn Rusaw, Steven J. M. Jones, Angela Brooks-Wilson: CGMIM: Automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes. BMC Bioinformatics 6: 78 (2005)
7		Artem Cherkasov, Zheng Shi, Yvonne Y. Li, Steven J. M. Jones, Magid Fallahi, Geoffrey L. Hammond: 'Inductive' Charges on Atoms in Proteins: Comparative Docking with the Extended Steroid Benchmark Set and Discovery of a Novel SHBG Ligand. Journal of Chemical Information and Modeling 45(6): 1842-1853 (2005)
	2004
6		Artem Cherkasov, Shannan J. Ho Sui, Robert C. Brunham, Steven J. M. Jones: Structural characterization of genomes by large scale sequence-structure threading: application of reliability analysis in structural genomics. BMC Bioinformatics 5: 101 (2004)
5		Artem Cherkasov, Steven J. M. Jones: Structural characterization of genomes by large scale sequence-structure threading. BMC Bioinformatics 5: 37 (2004)
4		Artem Cherkasov, Steven J. M. Jones: An approach to large scale identification of non-obvious structural similarities between proteins. BMC Bioinformatics 5: 61 (2004)
	2003
3		Scott D. Zuyderduyn, Steven J. M. Jones: A knowledge discovery object model API for Java. BMC Bioinformatics 4: 51 (2003)
	2002
2		Sheldon J. McKay, Steven J. M. Jones: AcePrimer: automation of PCR primer design based on gene structure. Bioinformatics 18(11): 1538-1539 (2002)
1		S. R. Ness, W. Terpstra, Martin Krzywinski, Marco A. Marra, Steven J. M. Jones: Assembly of fingerprint contigs: parallelized FPC. Bioinformatics 18(3): 484-485 (2002)

Coauthor Index

1	Stein Aerts	[20]
2	Jianghong An	[28] [29]
3	Tamara Astakhova	[10] [11]
4	Matthew N. Bainbridge	[19] [21]
5	Chris D. Bajdik	[8]
6	Casey M. Bergman	[13] [20]
7	Bridget Bernier	[20]
8	Mikhail Bilenky	[19] [20] [21] [23] [28]
9	Misha Bilenky	[10] [11] [13]
10	Inanç Birol	[22] [24] [26] [28] [30]
11	Enrique Blanco	[20]
12	Pieter J. De Bleser	[20]
13	Angela Brooks-Wilson	[8] [17]
14	Robert C. Brunham	[6]
15	Yaron S. N. Butterfield	[25] [28]
16	Timothee Cezard	[28]
17	Barbara M. Chapman	[16]
18	Artem Cherkasov	[4] [5] [6] [7] [12]
19	Bryan Chu	[20]
20	Eric Chuah	[28]
21	M. Chuang	[11]
22	Joseph M. Connors	[24]
23	Richard Corbett	[26] [28]
24	M. Dagpinar	[11]
25	Ian J. Donaldson	[20]
26	Martin Ester	[15] [23] [25] [31]
27	Magid Fallahi	[7]
28	Anthony P. Fejes	[21] [28] [30]
29	C. Fjell	[11]
30	Stephane Flibotte	[26]
31	Steven M. Gallo	[20]
32	Byron J. Gao	[15] [23] [31]
33	Randy D. Gascoyne	[24]
34	Belinda Giardine	[20]
35	Malachi Griffith	[20] [28]
36	Obi L. Griffith	[10] [11] [13] [15] [17] [20] [23] [28] [31]
37	Maximilian Haeussler	[20]
38	Marc S. Halfon	[20]
39	Geoffrey L. Hammond	[7]
40	H. Hao	[11]
41	Ross C. Hardison	[20]
42	Maik Hassel	[10] [11]
43	An He	[11] [19]
44	Martin Hirst	[24] [28]
45	Robert A. Holt	[18] [28]
46	Bart Hooghe	[20]
47	Douglas E. Horsman	[24]
48	David G. Huntsman	[28]
49	Shaun D. Jackman	[22] [24]
50	Katayoon Kasaian	[20]
51	Alireza Hadj Khodabakhshi	[30]
52	Martin Krzywinski	[1]
53	Byron Kuo	[8]
54	Janessa Laskin	[28]
55	Bernard Li	[11] [16]
56	Yvonne Y. Li	[7] [11] [12] [28] [29]
57	Keven Lin	[10] [11]
58	Stuart Lithwick	[20]
59	Peter Van Loo	[20]
60	Shaun Mahony	[20]
61	Nawar Malhis	[25] [27]
62	Marco A. Marra	[1] [24] [26] [28]
63	Montgomery Martin	[28]
64	Mark Mayo	[16]
65	Michael Mayo	[28]
66	Sheldon J. McKay	[2]
67	Nataliya Melnyk	[28]
68	Stephen Montgomery	[10] [11] [13] [17] [20]
69	Richard A. Moore	[28]
70	Ryan D. Morin	[24] [28]
71	S. R. Ness	[1]
72	Raymond T. Ng	[9]
73	Cydney B. Nielsen	[22] [24]
74	Mehrdad Oveisi	[10]
75	W. Pan	[11]
76	Y. Pan	[11]
77	Erin Pleasance	[10] [11] [13]
78	Elodie Portales-Casamar	[20]
79	Yuliya Prichyna	[23]
80	Y. Prychyna	[13]
81	Trevor J. Pugh	[28]
82	Jenny Q. Qian	[24]
83	Gordon Robertson	[10] [11] [19] [20] [21]
84	Neil Robertson	[10] [11]
85	Shawn Rusaw	[8]
86	Peter Ruzanov	[14]
87	P. Saeedi	[26]
88	Jörg Sander	[9] [11]
89	Jacqueline E. Schein	[24] [26]
90	Johanna M. Schuetz	[17]
91	Tesa Severson	[28]
92	Sohrab P. Shah	[28]
93	Zheng Shi	[7]
94	Asim S. Siddiqui	[10] [11] [16]
95	Monica C. Sleumer	[9] [10] [11] [13] [20]
96	Greg Stazyk	[24]
97	Shannan J. Ho Sui	[6]
98	Babu Sundaram	[16]
99	Margaret Sutcliffe	[28]
100	Granger G. Sutton	[18]
101	Angela Tam	[28]
102	Kevin Teague	[10] [11]
103	W. Terpstra	[1]
104	Jefferson Terry	[28]
105	Nina Thiessen	[28]
106	Thomas Thomson	[28]
107	Amy Ticoll	[20]
108	Richard Varhol	[10] [11] [21] [24] [28]
109	Dominique Vlieghe	[20]
110	Claes Wadelius	[20]
111	René L. Warren	[18] [19]
112	Wyeth W. Wasserman	[20]
113	R. T. F. Wong	[26]
114	Hui Xiong	[31]
115	John Yee	[28]
116	Man Saint Yuen	[9]
117	W. Yuen	[11]
118	Thomas Zeng	[28]
119	Maggie Zhang	[10]
120	X. Zhang	[11] [13]
121	Qiang Zhao	[31]
122	Yongjun Zhao	[24] [28]
123	Jianjun Zhou	[11]
124	Scott D. Zuyderduyn	[3]

Colors in the list of coauthors

Last update Sat Jun 2 20:57:36 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page