Trey Ideker

	2011
30		Michael E. Smoot, Keiichiro Ono, Johannes Ruscheinski, Peng-Liang Wang, Trey Ideker: Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 27(3): 431-432 (2011)
29		Michael E. Smoot, Keiichiro Ono, Trey Ideker, Steven Maere: PiNGO: a Cytoscape plugin to find candidate genes in biological networks. Bioinformatics 27(7): 1030-1031 (2011)
28		Janusz Dutkowski, Trey Ideker: Protein Networks as Logic Functions in Development and Cancer. PLoS Computational Biology 7(9): (2011)
	2010
27		Carlo Vittorio Cannistraci, Timothy Ravasi, Franco Maria Montevecchi, Trey Ideker, Massimo Alessio: Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes. Bioinformatics 26(18): (2010)
26		Konstantin Pentchev, Keiichiro Ono, Ralf Herwig, Trey Ideker, Atanas Kamburov: Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape. Bioinformatics 26(21): 2796-2797 (2010)
	2009
25		David M. Rocke, Trey Ideker, Olga G. Troyanskaya, John Quackenbush, Joaquín Dopazo: Papers on normalization, variable selection, classification or clustering of microarray data. Bioinformatics 25(6): 701-702 (2009)
	2008
24		Ryan M. Kelley, Hoda Feizi, Trey Ideker: Correcting for gene-specific dye bias in DNA microarrays using the method of maximum likelihood. Bioinformatics 24(1): 71-77 (2008)
23		Maxim Kalaev, Michael E. Smoot, Trey Ideker, Roded Sharan: NetworkBLAST: comparative analysis of protein networks. Bioinformatics 24(4): 594-596 (2008)
22		Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee: Inferring Pathway Activity toward Precise Disease Classification. PLoS Computational Biology 4(11): (2008)
21		Sourav Bandyopadhyay, Ryan M. Kelley, Nevan J. Krogan, Trey Ideker: Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data. PLoS Computational Biology 4(4): (2008)
	2007
20		Trey Ideker, Vineet Bafna: Systems Biology and Computational Proteomics, Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics, San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers Springer 2007
19		Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan: SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. ISMB/ECCB (Supplement of Bioinformatics) 2007: 359-366
18		H. Craig Mak, Mike Daly, Bianca Gruebel, Trey Ideker: CellCircuits: a database of protein network models. Nucleic Acids Research 35(Database-Issue): 538-545 (2007)
	2006
17		Eleazar Eskin, Trey Ideker, Benjamin J. Raphael, Christopher T. Workman: Systems Biology and Regulatory Genomics, Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers Springer 2006
16		Sourav Bandyopadhyay, Ryan M. Kelley, Trey Ideker: Discovering Regulated Networks During HIV-1 Latency and Reactivation. Pacific Symposium on Biocomputing 2006: 354-366
15		Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker: A direct comparison of protein interaction confidence assignment schemes. BMC Bioinformatics 7: 360 (2006)
14		Trey Ideker, Alfonso Valencia: Bioinformatics in the human interactome project. Bioinformatics 22(24): 2973-2974 (2006)
13		Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan: Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Journal of Computational Biology 13(2): 133-144 (2006)
12		Andreas Beyer, Christopher T. Workman, Jens Hollunder, Dörte Radke, Ulrich Möller, Thomas Wilhelm, Trey Ideker: Integrated Assessment and Prediction of Transcription Factor Binding. PLoS Computational Biology 2(6): (2006)
	2005
11		Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan: Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. RECOMB 2005: 1-13
10		Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker: Comparison of Protein-Protein Interaction Confidence Assignment Schemes. Systems Biology and Regulatory Genomics 2005: 39-50
9		Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp: Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology 12(6): 835-846 (2005)
8		Christopher T. Workman, Yutong Yin, David L. Corcoran, Trey Ideker, Gary D. Stormo, Panayiotis V. Benos: enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Research 33(Web-Server-Issue): 389-392 (2005)
7		Albert Hsiao, Trey Ideker, Jerrold M. Olefsky, Shankar Subramaniam: VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data. Nucleic Acids Research 33(Web-Server-Issue): 627-632 (2005)
	2004
6		Trey Ideker, Erik K. Neumann, Vincent Schächter: Session Introduction. Pacific Symposium on Biocomputing 2004: 471-473
5		Roded Sharan, Trey Ideker, Brian P. Kelley, Ron Shamir, Richard M. Karp: Identification of protein complexes by comparative analysis of yeast and bacterial protein interaction data. RECOMB 2004: 282-289
4		Chen-Hsiang Yeang, Trey Ideker, Tommi Jaakkola: Physical Network Models. Journal of Computational Biology 11(2/3): 243-262 (2004)
3		Brian P. Kelley, Bingbing Yuan, Fran Lewitter, Roded Sharan, Brent R. Stockwell, Trey Ideker: PathBLAST: a tool for alignment of protein interaction networks. Nucleic Acids Research 32(Web-Server-Issue): 83-88 (2004)
	2002
2		Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel: Discovering regulatory and signalling circuits in molecular interaction networks. ISMB 2002: 233-240
	2000
1		Trey Ideker, Vesteinn Thorsson, Andrew F. Siegel, Leroy E. Hood: Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data. Journal of Computational Biology 7(6): 805-817 (2000)

Coauthor Index

1	Massimo Alessio	[27]
2	Vineet Bafna	[20]
3	Sourav Bandyopadhyay	[16] [21]
4	Panayiotis V. Benos	[8]
5	Andreas Beyer	[12]
6	Carlo Vittorio Cannistraci	[27]
7	Han-Yu Chuang	[22]
8	David L. Corcoran	[8]
9	Mike Daly	[18]
10	Joaquín Dopazo	[25]
11	Janusz Dutkowski	[28]
12	Eleazar Eskin	[17]
13	Hoda Feizi	[24]
14	Bianca Gruebel	[18]
15	Ralf Herwig	[26]
16	Jens Hollunder	[12]
17	Leroy E. Hood	[1]
18	Albert Hsiao	[7]
19	Tommi Jaakkola	[4]
20	Maxim Kalaev	[23]
21	Atanas Kamburov	[26]
22	Richard M. Karp	[5] [9] [11] [13]
23	Brian P. Kelley	[3] [5] [9]
24	Ryan M. Kelley	[16] [21] [24]
25	Jong-Won Kim	[22]
26	Nevan J. Krogan	[21]
27	Doheon Lee	[22]
28	Eunjung Lee	[22]
29	Fran Lewitter	[3]
30	Steven Maere	[29]
31	H. Craig Mak	[18]
32	Ulrich Möller	[12]
33	Franco Maria Montevecchi	[27]
34	Erik K. Neumann	[6]
35	Jerrold M. Olefsky	[7]
36	Keiichiro Ono	[26] [29] [30]
37	Oved Ourfali	[19]
38	Owen Ozier	[2]
39	Konstantin Pentchev	[26]
40	John Quackenbush	[25]
41	Dörte Radke	[12]
42	Benjamin J. Raphael	[17]
43	Timothy Ravasi	[27]
44	David M. Rocke	[25]
45	Eytan Ruppin	[10] [15] [19]
46	Johannes Ruscheinski	[30]
47	Vincent Schächter	[6]
48	Benno Schwikowski	[2]
49	Jacob Scott	[11] [13]
50	Ron Shamir	[5] [9]
51	Roded Sharan	[3] [5] [9] [10] [11] [13] [15] [19] [23]
52	Tomer Shlomi	[10] [15] [19]
53	Andrew F. Siegel	[1] [2]
54	Michael E. Smoot	[23] [29] [30]
55	Brent R. Stockwell	[3]
56	Gary D. Stormo	[8]
57	Shankar Subramaniam	[7]
58	Silpa Suthram	[10] [15]
59	Vesteinn Thorsson	[1]
60	Olga G. Troyanskaya	[25]
61	Alfonso Valencia	[14]
62	Peng-Liang Wang	[30]
63	Thomas Wilhelm	[12]
64	Christopher T. Workman	[8] [12] [17]
65	Chen-Hsiang Yeang	[4]
66	Yutong Yin	[8]
67	Bingbing Yuan	[3]

Colors in the list of coauthors

Last update Sat Jun 2 20:57:36 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page