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| 2011 | ||
|---|---|---|
| 89 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 3-7 January 2011 World Scientific Publishing 2011 | |
| 88 | K. Bretonnel Cohen, Lawrence Hunter, Martha Palmer: A scaleable automated quality assurance technique for semantic representations and proposition banks. Linguistic Annotation Workshop 2011: 82-91 | |
| 87 | K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Hannah J. Tipney, Lawrence Hunter: High-Precision Biological Event Extraction: Effects of System and of Data. Computational Intelligence 27(4): 681-701 (2011) | |
| 86 | Yoshinobu Kano, Makoto Miwa, K. Bretonnel Cohen, Lawrence Hunter, Sophia Ananiadou, Jun-ichi Tsujii: U-Compare: A modular NLP workflow construction and evaluation system. IBM Journal of Research and Development 55(3): 11 (2011) | |
| 85 | Michael Bada, Lawrence Hunter: Desiderata for ontologies to be used in semantic annotation of biomedical documents. Journal of Biomedical Informatics 44(1): 94-101 (2011) | |
| 2010 | ||
| 84 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010 World Scientific Publishing 2010 | |
| 83 | Kevin M. Livingston, Helen L. Johnson, Karin Verspoor, Lawrence Hunter: Leveraging Gene Ontology Annotations to Improve a Memory-Based Language Understanding System. ICSC 2010: 40-45 | |
| 82 | Carsten Görg, Hannah J. Tipney, Karin Verspoor, William A. Baumgartner Jr., K. Bretonnel Cohen, John T. Stasko, Lawrence Hunter: Visualization and Language Processing for Supporting Analysis across the Biomedical Literature. KES (4) 2010: 420-429 | |
| 81 | K. Bretonnel Cohen, Christophe Roeder, William A. Baumgartner Jr., Lawrence Hunter, Karin Verspoor: Test Suite Design for Biomedical Ontology Concept Recognition Systems. LREC 2010 | |
| 80 | Adrien Coulet, Nigam H. Shah, Lawrence Hunter, Chitta Baral, Russ B. Altman: Extraction of Genotype-Phenotype-Drug Relationships from Text: From Entity Recognition to Bioinformatics Application. Pacific Symposium on Biocomputing 2010: 485-487 | |
| 79 | K. Bretonnel Cohen, Helen L. Johnson, Karin Verspoor, Christophe Roeder, Lawrence Hunter: The structural and content aspects of abstracts versus bodies of full text journal articles are different. BMC Bioinformatics 11: 492 (2010) | |
| 78 | Christophe Roeder, Clement Jonquet, Nigam H. Shah, William A. Baumgartner Jr., Karin Verspoor, Lawrence Hunter: A UIMA wrapper for the NCBO annotator. Bioinformatics 26(14): 1800-1801 (2010) | |
| 77 | Karin Verspoor, Christophe Roeder, Helen L. Johnson, K. Bretonnel Cohen, William A. Baumgartner Jr., Lawrence Hunter: Exploring Species-Based Strategies for Gene Normalization. IEEE/ACM Trans. Comput. Biology Bioinform. 7(3): 462-471 (2010) | |
| 76 | Yves A. Lussier, Atul J. Butte, Lawrence Hunter: Current methodologies for translational bioinformatics. Journal of Biomedical Informatics 43(3): 355-357 (2010) | |
| 2009 | ||
| 75 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009 Pacific Symposium on Biocomputing 2009 | |
| 74 | John T. Stasko, Sarah Cohen, Lawrence Hunter, Joe Parry: How interactive visualization can assist investigative analysis: Views and perspectives from domain experts. IEEE VAST 2009: 279-281 | |
| 73 | Hannah J. Tipney, Sonia M. Leach, Weiguo Feng, Richard A. Spritz, Trevor Williams, Lawrence Hunter: Leveraging existing biological knowledge in the identification of candidate genes for facial dysmorphology. BMC Bioinformatics 10(S-2): (2009) | |
| 72 | Karin Verspoor, K. Bretonnel Cohen, Lawrence Hunter: The textual characteristics of traditional and Open Access scientific journals are similar. BMC Bioinformatics 10: (2009) | |
| 71 | Karin Verspoor, Daniel Dvorkin, K. Bretonnel Cohen, Lawrence Hunter: Ontology quality assurance through analysis of term transformations. Bioinformatics 25(12): (2009) | |
| 70 | Yoshinobu Kano, William A. Baumgartner Jr., Luke McCrohon, Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter, Jun-ichi Tsujii: U-Compare: share and compare text mining tools with UIMA. Bioinformatics 25(15): 1997-1998 (2009) | |
| 69 | Edward H. Shortliffe, Andrea Califano, Lawrence Hunter: New JBI emphasis on translational bioinformatics. Journal of Biomedical Informatics 42(2): 199-200 (2009) | |
| 68 | Sonia M. Leach, Hannah J. Tipney, Weiguo Feng, William A. Baumgartner Jr., Priyanka Kasliwal, Ronald P. Schuyler, Trevor Williams, Richard A. Spritz, Lawrence Hunter: Biomedical Discovery Acceleration, with Applications to Craniofacial Development. PLoS Computational Biology 5(3): (2009) | |
| 2008 | ||
| 67 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008 World Scientific 2008 | |
| 66 | Michael Bada, Chris Mungall, Lawrence Hunter: A Call for an Abductive Reasoning Feature in OWL-Reasoning Tools toward Ontology Quality Control. OWLED 2008 | |
| 65 | J. Gregory Caporaso, Nita Deshpande, J. Lynn Fink, Philip E. Bourne, K. Bretonnel Cohen, Lawrence Hunter: Intrinsic Evaluation of Text Mining Tools May Not Predict Performance on Realistic Tasks. Pacific Symposium on Biocomputing 2008: 640-651 | |
| 64 | Aaron Gabow, Sonia M. Leach, William A. Baumgartner Jr., Lawrence Hunter, Debra Goldberg: Improving protein function prediction methods with integrated literature data. BMC Bioinformatics 9: (2008) | |
| 63 | Lawrence Hunter, Zhiyong Lu, James Firby, William A. Baumgartner Jr., Helen L. Johnson, Philip V. Ogren, K. Bretonnel Cohen: OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC Bioinformatics 9: (2008) | |
| 62 | Anis Karimpour-Fard, Sonia M. Leach, Ryan T. Gill, Lawrence Hunter: Predicting protein linkages in bacteria: Which method is best depends on task. BMC Bioinformatics 9: (2008) | |
| 61 | Steven Bethard, Zhiyong Lu, James H. Martin, Lawrence Hunter: Semantic role labeling for protein transport predicates. BMC Bioinformatics 9: (2008) | |
| 60 | Michael Bada, Lawrence Hunter: Identification of OBO nonalignments and its implications for OBO enrichment. Bioinformatics 24(12): 1448-1455 (2008) | |
| 59 | K. Bretonnel Cohen, Lawrence Hunter: Getting Started in Text Mining. PLoS Computational Biology 4(1): (2008) | |
| 2007 | ||
| 58 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein: Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2007 World Scientific 2007 | |
| 57 | Hyunmin Kim, Katherina J. Kechris, Lawrence Hunter: Mining Discriminative Distance Context of Transcription Factor Binding Sites on ChIP Enriched Regions. ISBRA 2007: 338-349 | |
| 56 | William A. Baumgartner Jr., K. Bretonnel Cohen, Lynne M. Fox, George Acquaah-Mensah, Lawrence Hunter: Manual curation is not sufficient for annotation of genomic databases. ISMB/ECCB (Supplement of Bioinformatics) 2007: 41-48 | |
| 55 | Helen L. Johnson, K. Bretonnel Cohen, Lawrence Hunter: A Fault Model for Ontology Mapping, Alignment, and Linking Systems. Pacific Symposium on Biocomputing 2007: 233-268 | |
| 54 | Zhiyong Lu, K. Bretonnel Cohen, Lawrence Hunter: Generif Quality Assurance as Summary Revision. Pacific Symposium on Biocomputing 2007: 269-280 | |
| 53 | Sonia M. Leach, Aaron Gabow, Lawrence Hunter, Debra Goldberg: Assessing and Combining Reliability of Protein Interaction Sources. Pacific Symposium on Biocomputing 2007: 433-444 | |
| 52 | J. Gregory Caporaso, William A. Baumgartner Jr., David A. Randolph, K. Bretonnel Cohen, Lawrence Hunter: MutationFinder: a high-performance system for extracting point mutation mentions from text. Bioinformatics 23(14): 1862-1865 (2007) | |
| 51 | J. Gregory Caporaso, William A. Baumgartner Jr., David A. Randolph, K. Bretonnel Cohen, Lawrence Hunter: Rapid Pattern Development for Concept Recognition Systems: Application to Point mutations. J. Bioinformatics and Computational Biology 5(6): 1233-1259 (2007) | |
| 50 | Michael Bada, Lawrence Hunter: Enrichment of OBO ontologies. Journal of Biomedical Informatics 40(3): 300-315 (2007) | |
| 49 | Lawrence Hunter, Russ B. Altman, Philip E. Bourne: The International Society for Computational Biology 10th Anniversary. PLoS Computational Biology 3(6): (2007) | |
| 2006 | ||
| 48 | Russ B. Altman, Tiffany Murray, Teri E. Klein, A. Keith Dunker, Lawrence Hunter: Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006 World Scientific 2006 | |
| 47 | Helen L. Johnson, K. Bretonnel Cohen, William A. Baumgartner Jr., Zhiyong Lu, Michael Bada, Todd Kester, Hyunmin Kim, Lawrence Hunter: Evaluation of Lexical Methods for Detecting Relationships Between Concepts from Multiple Ontologies. Pacific Symposium on Biocomputing 2006: 28-39 | |
| 46 | Zhiyong Lu, K. Bretonnel Cohen, Lawrence Hunter: Finding GeneRIFs via Gene Ontology Annotations. Pacific Symposium on Biocomputing 2006: 52-63 | |
| 45 | J. Gregory Caporaso, William A. Baumgartner Jr., Hyunmin Kim, Zhiyong Lu, Helen L. Johnson, Olga Medvedeva, Anna Lindemann, Lynne M. Fox, Elizabeth K. White, K. Bretonnel Cohen, Lawrence Hunter: Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering. TREC 2006 | |
| 44 | K. Bretonnel Cohen, Lawrence Hunter: A critical review of PASBio's argument structures for biomedical verbs. BMC Bioinformatics 7(S-3): (2006) | |
| 2005 | ||
| 43 | Russ B. Altman, Tiffany A. Jung, Teri E. Klein, A. Keith Dunker, Lawrence Hunter: Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005 World Scientific 2005 | |
| 42 | Z. Lu, Lawrence Hunter: GO Molecular Function Terms Are Predictive of Subcellular Localization. Pacific Symposium on Biocomputing 2005 | |
| 41 | Philip V. Ogren, K. Bretonnel Cohen, Lawrence Hunter: Implications of Compositionality in the Gene Ontology for Its Curation and Usage . Pacific Symposium on Biocomputing 2005 | |
| 40 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2005 | |
| 39 | J. Gregory Caporaso, William A. Baumgartner Jr., K. Bretonnel Cohen, Helen L. Johnson, Jesse Paquette, Lawrence Hunter: Concept Recognition and the TREC Genomics Tasks. TREC 2005 | |
| 38 | Shuhei Kinoshita, K. Bretonnel Cohen, Philip V. Ogren, Lawrence Hunter: BioCreAtIvE Task1A: entity identification with a stochastic tagger. BMC Bioinformatics 6(S-1): (2005) | |
| 2004 | ||
| 37 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany A. Jung, Teri E. Klein: Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004 World Scientific 2004 | |
| 36 | Min Hong, Anis Kairmpour-fard, Steve Russell, Lawrence Hunter: Integrated Term Weighting, Visualization, and User Interface Development for Bioinformation Retrieval. AIS 2004: 673-682 | |
| 35 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2004 | |
| 34 | Philip V. Ogren, K. Bretonnel Cohen, George Acquaah-Mensah, Jens Eberlein, Lawrence Hunter: The Compositional Structure of Gene Ontology Terms. Pacific Symposium on Biocomputing 2004: 214-225 | |
| 33 | Lawrence Hunter: Life and Its Molecules: A Brief Introduction. AI Magazine 25(1): 9-22 (2004) | |
| 2003 | ||
| 32 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2003 | |
| 31 | Tzu L. Phang, Margaret C. Neville, Michael Rudolph, Lawrence Hunter: Trajectory Clustering: A Non-Parametric Method for Grouping Gene Expression Time Courses with Applications to Mammary Development. Pacific Symposium on Biocomputing 2003: 351-362 | |
| 30 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Special Paper - Introduction. Pacific Symposium on Biocomputing 2003: 636-637 | |
| 29 | Eric W. Brown, Andrew Dolbey, Lawrence Hunter: IBM Research and the University of Colorado - TREC 2003 Genomics Track. TREC 2003: 268-275 | |
| 2002 | ||
| 28 | K. Bretonnel Cohen, Andrew Dolbey, George Acquaah-Mensah, Lawrence Hunter: Contrast and variability in gene names. ACL Workshop on Natural Language Processing in the Biomedical Domain 2002: 14-20 | |
| 27 | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface. Pacific Symposium on Biocomputing 2002 | |
| 26 | Mary E. Edgerton, Ronald C. Taylor, John I. Powell, Lawrence Hunter, Richard Simon, Edison T. Liu: A bioinformatics tool to select sequences for microarray studies of mouse models of oncogenesis. Bioinformatics 18(5): 774-775 (2002) | |
| 25 | Lawrence Hunter, Richard H. Lathrop: Guest Editors' Introduction-Computer Science and Biology: An Unlikely Pair. IEEE Intelligent Systems 17(2): 8-10 (2002) | |
| 2001 | ||
| 24 | Lawrence Hunter, Ronald C. Taylor, Sonia M. Leach, Richard Simon: GEST: a gene expression search tool based on a novel Bayesian similarity metric. ISMB (Supplement of Bioinformatics) 2001: 115-122 | |
| 2000 | ||
| 23 | Thomas C. Rindflesch, Jayant V. Rajan, Lawrence Hunter: Extracting Molecular Binding Relationships from Biomedical Text. ANLP 2000: 188-195 | |
| 1999 | ||
| 22 | Sonia M. Leach, Lawrence Hunter, David Landsman: Comparison of Clustering Metrics and Unsupervised Learning Algorithms on Genome-Wide Gene Expression Level Data. AAAI/IAAI 1999: 966 | |
| 1998 | ||
| 21 | Imran Shah, Lawrence Hunter: Identification of Divergent Functions in Homologous Proteins by Induction over Conserved Modules. ISMB 1998: 157-164 | |
| 1997 | ||
| 20 | Lawrence Hunter, Barry Zeeberg: Identifying Chimerism in Proteins Using Hidden Markov Models of Codon Usage. ISMB 1997: 153-156 | |
| 19 | Imran Shah, Lawrence Hunter: Predicting Enzyme Function from Sequence: A Systematic Appraisal. ISMB 1997: 276-283 | |
| 18 | Jeffrey L. Krichmar, Giorgio A. Ascoli, Lawrence Hunter, James L. Olds: A Model of Cerebellar Saccadic Motor Learning Using Qualitative Reasoning. IWANN 1997: 133-145 | |
| 1996 | ||
| 17 | David J. States, Pankaj Agarwal, Terry Gaasterland, Lawrence Hunter, Randall Smith: Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996 AAAI 1996 | |
| 1995 | ||
| 16 | Christopher J. Rawlings, Dominic A. Clark, Russ B. Altman, Lawrence Hunter, Thomas Lengauer, Shoshana J. Wodak: Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995 AAAI 1995 | |
| 15 | Jude W. Shavlik, Lawrence Hunter, David B. Searls: Introduction. Machine Learning 21(1-2): 5-9 (1995) | |
| 1994 | ||
| 14 | David B. Searls, Jude W. Shavlik, Lawrence Hunter: The First International Conference on Intelligent Systems for Molecular Biology. AI Magazine 15(1): 12-13 (1994) | |
| 1993 | ||
| 13 | Lawrence Hunter, David B. Searls, Jude W. Shavlik: Proceedings of the 1st International Conference on Intelligent Systems for Molecular Biology, Bethesda, MD, USA, July 1993 AAAI 1993 | |
| 12 | Hiroaki Kitano, Walther von Hahn, Lawrence Hunter, Ryuichi Oka, Benjamin W. Wah, Toshio Yokoi: Grand Challenge AI Applications. IJCAI 1993: 1677-1683 | |
| 11 | Lawrence Hunter, Teri E. Klein: Finding Relevant Biomolecular Features. ISMB 1993: 190-197 | |
| 10 | David J. States, Nomi L. Harris, Lawrence Hunter: Computationally Efficient Cluster Representation in Molecular Sequence Megaclassification. ISMB 1993: 387-394 | |
| 1992 | ||
| 9 | Nomi L. Harris, Lawrence Hunter, David J. States: Mega-Classification: Discovering Motifs in Massive Datastreams. AAAI 1992: 837-842 | |
| 8 | Lawrence Hunter: Artificial Intelligence and Molecular Biology. AAAI 1992: 866-868 | |
| 7 | Lawrence Hunter, Nomi L. Harris, David J. States: Efficient Classification of Massive, Unsegmented Datastreams. ML 1992: 224-232 | |
| 6 | Ashwin Ram, Lawrence Hunter: The use of explicit goals for knowledge to guide inference and learning. Appl. Intell. 2(1): 47-73 (1992) | |
| 5 | Lawrence Hunter, David J. States: Bayesian Classification of Protein Structure. IEEE Expert 7(4): 67-75 (1992) | |
| 1991 | ||
| 4 | Ashwin Ram, Lawrence Hunter: A Goal-Based Approach to Intelligent Information Retrieval. ML 1991: 265-269 | |
| 3 | Lawrence Hunter: Artificial Intelligence and Molecular Biology. AI Magazine 11(5): 27-36 (1991) | |
| 1989 | ||
| 2 | Lawrence Hunter: Knowledge Acquisition Planning: Results and Prospects. ML 1989: 61-65 | |
| 1988 | ||
| 1 | Lawrence Hunter: Estimating Human Cognitive Capacities: A Response to Landauer. Cognitive Science 12(2): 287-291 (1988) | |
Colors in the list of coauthors
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