Timothy R. Hughes

	2012
16		Carl G. de Boer, Timothy R. Hughes: YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities. Nucleic Acids Research 40(Database-Issue): 169-179 (2012)
	2011
15		Kate B. Cook, Hilal Kazan, Khalid Zuberi, Quaid Morris, Timothy R. Hughes: RBPDB: a database of RNA-binding specificities. Nucleic Acids Research 39(Database-Issue): 301-308 (2011)
	2010
14		John E. Beaver, Murat Tasan, Francis D. Gibbons, Weidong Tian, Timothy R. Hughes, Frederick P. Roth: FuncBase : a resource for quantitative gene function annotation. Bioinformatics 26(14): 1806-1807 (2010)
13		Hilal Kazan, Debashish Ray, Esther T. Chan, Timothy R. Hughes, Quaid Morris: RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins. PLoS Computational Biology 6(7): (2010)
	2009
12		Benjamin J. Blencowe, Steven E. Brenner, Timothy R. Hughes, Quaid Morris: Post-Transcriptional Gene Regulation: RNA-Protein Interactions, RNA Processing, mRNA Stability and Localization. Pacific Symposium on Biocomputing 2009: 545-548
11		Desiree Tillo, Timothy R. Hughes: G+C content dominates intrinsic nucleosome occupancy. BMC Bioinformatics 10: 442 (2009)
10		Trevis M. Alleyne, Lourdes Peña Castillo, Gwenael Badis, Shaheynoor Talukder, Michael F. Berger, Andrew R. Gehrke, Anthony A. Philippakis, Martha L. Bulyk, Quaid Morris, Timothy R. Hughes: Predicting the binding preference of transcription factors to individual DNA k-mers. Bioinformatics 25(8): 1012-1018 (2009)
	2008
9		Gerald Quon, Yee Whye Teh, Esther T. Chan, Timothy R. Hughes, Michael Brudno, Quaid Morris: A mixture model for the evolution of gene expression in non-homogeneous datasets. NIPS 2008: 1297-1304
	2007
8		Xiaoyu Chen, Timothy R. Hughes, Quaid Morris: RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors. ISMB/ECCB (Supplement of Bioinformatics) 2007: 72-79
7		Tomas Babak, Benjamin J. Blencowe, Timothy R. Hughes: Considerations in the identification of functional RNA structural elements in genomic alignments. BMC Bioinformatics 8: (2007)
	2006
6		Brendan J. Frey, Quaid Morris, Timothy R. Hughes: GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data. Journal of Computational Biology 13(2): 200-214 (2006)
	2005
5		Jim C. Huang, Quaid Morris, Timothy R. Hughes, Brendan J. Frey: GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data. ISMB (Supplement of Bioinformatics) 2005: 222-231
4		Brendan J. Frey, Quaid Morris, Wen Zhang, Naveed Mohammad, Timothy R. Hughes: GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data. Pacific Symposium on Biocomputing 2005
3		Brendan J. Frey, Quaid Morris, Mark D. Robinson, Timothy R. Hughes: Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model. RECOMB 2005: 66-82
	2004
2		Kimberly N. Lewis, Mark D. Robinson, Timothy R. Hughes, Christopher W. V. Hogue: MyMed: A database system for biomedical research on MEDLINE data. IBM Systems Journal 43(4): 756- (2004)
	2002
1		Mark D. Robinson, Jörg Grigull, Naveed Mohammad, Timothy R. Hughes: FunSpec: a web-based cluster interpreter for yeast. BMC Bioinformatics 3: 35 (2002)

Coauthor Index

1	Trevis M. Alleyne	[10]
2	Tomas Babak	[7]
3	Gwenael Badis	[10]
4	John E. Beaver	[14]
5	Michael F. Berger	[10]
6	Benjamin J. Blencowe	[7] [12]
7	Carl G. de Boer	[16]
8	Steven E. Brenner	[12]
9	Michael Brudno	[9]
10	Martha L. Bulyk	[10]
11	Lourdes Peña Castillo	[10]
12	Esther T. Chan	[9] [13]
13	Xiaoyu Chen	[8]
14	Kate B. Cook	[15]
15	Brendan J. Frey	[3] [4] [5] [6]
16	Andrew R. Gehrke	[10]
17	Francis D. Gibbons	[14]
18	Jörg Grigull	[1]
19	Christopher W. V. Hogue	[2]
20	Jim C. Huang	[5]
21	Hilal Kazan	[13] [15]
22	Kimberly N. Lewis	[2]
23	Naveed Mohammad	[1] [4]
24	Quaid Morris	[3] [4] [5] [6] [8] [9] [10] [12] [13] [15]
25	Anthony A. Philippakis	[10]
26	Gerald Quon	[9]
27	Debashish Ray	[13]
28	Mark D. Robinson	[1] [2] [3]
29	Frederick P. Roth	[14]
30	Shaheynoor Talukder	[10]
31	Murat Tasan	[14]
32	Yee Whye Teh	[9]
33	Weidong Tian	[14]
34	Desiree Tillo	[11]
35	Wen Zhang	[4]
36	Khalid Zuberi	[15]

Colors in the list of coauthors

Last update Thu May 31 18:55:10 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page