Xiaoqiu Huang

	2011
28		Ankit Agrawal, Xiaoqiu Huang: Pairwise Statistical Significance of Local Sequence Alignment Using Sequence-Specific and Position-Specific Substitution Matrices. IEEE/ACM Trans. Comput. Biology Bioinform. 8(1): 194-205 (2011)
	2010
27		Ankit Agrawal, Alok N. Choudhary, Xiaoqiu Huang: Derived distribution points heuristic for fast pairwise statistical significance estimation. BCB 2010: 312-321
26		Ankit Agrawal, Alok N. Choudhary, Xiaoqiu Huang: Non-Conservative Pairwise Statistical Significance of Local Sequence Alignment Using Position-Specific Substitution Matrices. BIOCOMP 2010: 262-268
	2009
25		Ankit Agrawal, Xiaoqiu Huang: Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty. BMC Bioinformatics 10(S-3): (2009)
24		Ankit Agrawal, Xiaoqiu Huang: PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance. Bioinformatics 25(8): 1082-1083 (2009)
	2008
23		Ankit Agrawal, Xiaoqiu Huang: Conservative, Non-conservative and Average Pairwise Statistical Significance of Local Sequence Alignment. BIBM 2008: 433-436
22		Ankit Agrawal, Xiaoqiu Huang: Pairwise statistical significance of local sequence alignment using multiple parameter sets. DTMBIO 2008: 53-60
21		Ankit Agrawal, Xiaoqiu Huang: DNAlignTT: Pairwise DNA alignment with sequence specific transition-transversion ratio. EIT 2008: 453-455
20		Ankit Agrawal, Volker Brendel, Xiaoqiu Huang: Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences. ISBRA 2008: 50-61
19		Ankit Agrawal, Arka P. Ghosh, Xiaoqiu Huang: Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition. ISBRA 2008: 62-73
18		Ankit Agrawal, Volker Brendel, Xiaoqiu Huang: Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment. I. J. Computational Biology and Drug Design 1(4): 347-367 (2008)
17		Xiaoqiu Huang: Sequence Alignment with an Appropriate Substitution Matrix. Journal of Computational Biology 15(2): 129-138 (2008)
	2005
16		Jianmin Wang, Xiaoqiu Huang: A method for finding single-nucleotide polymorphisms with allele frequencies in sequences of deep coverage. BMC Bioinformatics 6: 220 (2005)
	2004
15		I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsian Huang, Liang Ye, Xiaoqiu Huang, Kun-Mao Chao: Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds. BIBE 2004: 411-418
14		Xiaoqiu Huang, Liang Ye, I-Hsuan Yang, Kun-Mao Chao: A Sensitive Sequence Comparison Method. SNPD 2004: 77-80
13		Xiaoqiu Huang, Liang Ye, Hui-Hsien Chou, I-Hsuan Yang, Kun-Mao Chao: Efficient combination of multiple word models for improved sequence comparison. Bioinformatics 20(16): 2529-2533 (2004)
	2003
12		Yaw-Ling Lin, Xiaoqiu Huang, Tao Jiang, Kun-Mao Chao: MAVG: locating non-overlapping maximum average segments in a given sequence. Bioinformatics 19(1): 151-152 (2003)
11		Xiaoqiu Huang, Kun-Mao Chao: A generalized global alignment algorithm. Bioinformatics 19(2): 228-233 (2003)
10		Geo Pertea, Xiaoqiu Huang, Feng Liang, Valentin Antonescu, Razvan Sultana, Svetlana Karamycheva, Yuandan Lee, Joseph White, Foo Cheung, Babak Parvizi, Jennifer Tsai, John Quackenbush: TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19(5): 651-652 (2003)
9		Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang: Parallel Syntenic Alignments. Parallel Processing Letters 13(4): 689-703 (2003)
	2002
8		Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang: Parallel Syntenic Alignments. HiPC 2002: 420-430
	1994
7		Xiaoqiu Huang: A Context Dependent Method for Comparing Sequences. CPM 1994: 54-63
6		Xiaoqiu Huang, Pavel A. Pevzner, Webb Miller: Parametric Recomuting in Alignment Graphs. CPM 1994: 87-101
	1992
5		Xiaoqiu Huang, Webb Miller, Scott Schwartz, Ross C. Hardison: Parallelization of a local similarity algorithm. Computer Applications in the Biosciences 8(2): 155-165 (1992)
	1990
4		Xiaoqiu Huang: Computing Local Sequence Similarities on a Hypercube. ICPP (3) 1990: 360-361
3		Xiaoqiu Huang, Ross C. Hardison, Webb Miller: A space-efficient algorithm for local similarities. Computer Applications in the Biosciences 6(4): 373-381 (1990)
	1989
2		Xiaoqiu Huang: A space-efficient parallel sequence comparison algorithm for a message-passing multiprocessor. International Journal of Parallel Programming 18(3): 223-239 (1989)
	1988
1		Xiaoqiu Huang: A Lower Bound for the Edit-Distance Problem Under an Arbitrary Cost Function. Inf. Process. Lett. 27(6): 319-321 (1988)

Coauthor Index

1	Ankit Agrawal	[18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28]
2	Srinivas Aluru	[8] [9]
3	Valentin Antonescu	[10]
4	Volker Brendel	[18] [20]
5	Kun-Mao Chao	[11] [12] [13] [14] [15]
6	Yang-Ho Chen	[15]
7	Foo Cheung	[10]
8	Hui-Hsien Chou	[13]
9	Alok N. Choudhary	[26] [27]
10	Natsuhiko Futamura	[8] [9]
11	Arka P. Ghosh	[19]
12	Ross C. Hardison	[3] [5]
13	Pao-Hsian Huang	[15]
14	Tao Jiang	[12]
15	Svetlana Karamycheva	[10]
16	Yuandan Lee	[10]
17	Feng Liang	[10]
18	Yaw-Ling Lin	[12]
19	Webb Miller (Webb C. Miller)	[3] [5] [6]
20	Babak Parvizi	[10]
21	Geo Pertea	[10]
22	Pavel A. Pevzner	[6]
23	John Quackenbush	[10]
24	Scott Schwartz	[5]
25	Razvan Sultana	[10]
26	Jennifer Tsai	[10]
27	Sheng-Ho Wang	[15]
28	Jianmin Wang	[16]
29	Joseph White	[10]
30	I-Hsuan Yang	[13] [14] [15]
31	Liang Ye	[13] [14] [15]

Colors in the list of coauthors

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