 | 2012 |
| 35 |  | Elisabeth Wong,
Brittany Baur,
Saad Quader,
Chun-Hsi Huang:
Biological network motif detection: principles and practice.
Briefings in Bioinformatics 13(2): 202-215 (2012) |
| 2011 |
| 34 |  | Saad Quader,
Nathan Snyder,
Kevin Su,
Ericka Mochan,
Chun-Hsi Huang:
ML-Consensus: A General Consensus Model for Variable-Length Transcription Factor Binding Sites.
EvoBio 2011: 25-36 |
| 33 |  | Carol Wong,
Yuran Li,
Chih Lee,
Chun-Hsi Huang:
Ensemble learning algorithms for classification of mtDNA into haplogroups.
Briefings in Bioinformatics 12(1): 1-9 (2011) |
| 2010 |
| 32 |  | Claire Luciano,
Chun-Hsi Huang:
Structural Motif Enumeration in Transcriptional Regulation Networks.
BIOINFORMATICS 2010: 187-192 |
| 31 |  | Jared Christopherson,
Chun-Hsi Huang:
Optimized Data Migration within a Medical Grid.
HEALTHINF 2010: 481-484 |
| 2009 |
| 30 |  | Chih Lee,
Ali Abdool,
Chun-Hsi Huang:
PCA-based population structure inference with generic clustering algorithms.
BMC Bioinformatics 10(S-1): (2009) |
| 2008 |
| 29 |  | Vincenzo Lanza,
M. Ignazia Cascio,
Chun-Hsi Huang:
Towards On-Demand Biomedical Knowledge Extraction.
HEALTHINF (1) 2008: 102-109 |
| 28 |  | Chun-Hsi Huang,
Akihiko Konagaya,
Vincenzo Lanza,
Peter M. A. Sloot:
Guest Editorial Introduction to the Special Section on BioGrid: Biomedical Computations on the Grid.
IEEE Transactions on Information Technology in Biomedicine 12(2): 133-137 (2008) |
| 2006 |
| 27 |  | Longde Yin,
Chun-Hsi Huang:
A Heuristic Approach to Scoring Gene Clustering Algorithms.
BIOCOMP 2006: 135-141 |
| 26 |  | Thomas B. Puzak,
Chun-Hsi Huang:
An analysis of the effects of spatial locality on the cache performance of binary search trees.
ICSOFT (2) 2006: 94-101 |
| 25 |  | Longde Yin,
Chun-Hsi Huang:
Clustering of Gene Expression Data: Performance and Similarity Analysis.
IMSCCS (1) 2006: 142-149 |
| 24 |  | Longde Yin,
Chun-Hsi Huang,
Jun Ni:
Clustering of gene expression data: performance and similarity analysis.
BMC Bioinformatics 7(S-4): (2006) |
| 23 |  | Chun-Hsi Huang,
Sanguthevar Rajasekaran,
Laurence Tianruo Yang,
Xin He:
Finding Hamiltonian paths in tournaments on clusters.
Cluster Computing 9(3): 345-353 (2006) |
| 22 |  | Chun-Hsi Huang,
Xin He,
Min Qian:
Communication-optimal parallel parenthesis matching.
Parallel Computing 32(1): 14-23 (2006) |
| 2005 |
| 21 |  | Sanguthevar Rajasekaran,
Sudha Balla,
Chun-Hsi Huang,
Vishal Thapar,
Michael R. Gryk,
Mark W. Maciejewski,
Martin R. Schiller:
Exact algorithms for motif search.
APBC 2005: 239-248 |
| 20 |  | Sanguthevar Rajasekaran,
Sudha Balla,
Chun-Hsi Huang:
Exact algorithms for planted motif challenge problems.
APBC 2005: 249-259 |
| 19 |  | Chun-Hsi Huang,
Sanguthevar Rajasekaran:
BioGrid- bridging life science and information technology.
CCGRID 2005: 450-454 |
| 18 |  | Sanguthevar Rajasekaran,
Sudha Balla,
Chun-Hsi Huang:
Exact Algorithms for Planted Motif Problems.
Journal of Computational Biology 12(8): 1117-1128 (2005) |
| 2004 |
| 17 |  | Chain-Wu Lee,
Laurence Tianruo Yang,
Chun-Hsi Huang,
Sanguthevar Rajasekaran,
D. Frank Hsu:
Distributed Path-Based Inference in Semantic Networks.
ISPAN 2004: 232-238 |
| 16 |  | Sanguthevar Rajasekaran,
Vishal Thapar,
Hardik Dave,
Chun-Hsi Huang:
A Randomized Algorithm for Distance Matrix Calculations in Multiple Sequence Alignment.
KELSI 2004: 33-45 |
| 15 |  | Chain-Wu Lee,
Chun-Hsi Huang:
Toward cooperative genomic knowledge inference.
Parallel Computing 30(9-10): 1127-1135 (2004) |
| 14 |  | Chun-Hsi Huang,
Sanguthevar Rajasekaran:
High-performance parallel bio-computing.
Parallel Computing 30(9-10): 999-1000 (2004) |
| 13 |  | Chain-Wu Lee,
Chun-Hsi Huang,
Laurence Tianruo Yang,
Sanguthevar Rajasekaran:
Distributed Path-Based Inference in Semantic Networks.
The Journal of Supercomputing 29(2): 211-227 (2004) |
| 2003 |
| 12 |  | Chain-Wu Lee,
Chun-Hsi Huang,
Sanguthevar Rajasekaran:
TROJAN: A Scalable Distributed Semantic Network System.
ICTAI 2003: 219- |
| 2002 |
| 11 |  | Chun-Hsi Huang,
Ratnabali Biswas:
Parallel Pattern Identification in Biological Sequences on Clusters.
CLUSTER 2002: 127-134 |
| 10 |  | Chun-Hsi Huang,
Xin He:
Average-Case Communication-Optimal Parallel Parenthesis Matching.
ISAAC 2002: 308-319 |
| 9 |  | Chun-Hsi Huang:
Grid-enabled parallel divide-and-conquer: theory and practice.
SAC 2002: 865-869 |
| 8 |  | Zhi-Zhong Chen,
Xin He,
Chun-Hsi Huang:
Finding Double Euler Trails of Planar Graphs in Linear Time.
SIAM J. Comput. 31(4): 1255-1285 (2002) |
| 2001 |
| 7 |  | Chun-Hsi Huang,
Xin He:
Communication-Efficient Bulk Synchronous Parallel Algorithm for Parentheses Matching.
PPSC 2001 |
| 6 |  | Chun-Hsi Huang,
Xin He:
Parallel Range Searching in Large Databases Based on General Parallel Prefix Computation.
PPSC 2001 |
| 5 |  | Chun-Hsi Huang,
Xin He:
Finding a hamiltonian paths in tournaments on clusters - a provably communication-efficient approach.
SAC 2001: 549-553 |
| 4 |  | Xin He,
Chun-Hsi Huang:
Communication Efficient BSP Algorithm for All Nearest Smaller Values Problem.
J. Parallel Distrib. Comput. 61(10): 1425-1438 (2001) |
| 2000 |
| 3 |  | Chun-Hsi Huang,
Xin He:
Communication Efficient Coarse-Grained Parallel Algorithm for All Nearest Smaller Values Problem and its Applications.
PDPTA 2000 |
| 2 |  | Xin He,
Chun-Hsi Huang:
Scalable Coarse Grained Parallel Interval Graph Algorithms.
PDPTA 2000 |
| 1999 |
| 1 |  | Zhi-Zhong Chen,
Xin He,
Chun-Hsi Huang:
Finding Double Euler Trails of Planar Graphs in Linear Time.
FOCS 1999: 319-329 |