 | 2011 |
| 13 |  | Yasumasa Kimura,
Michiel J. L. de Hoon,
Shintaro Aoki,
Yuri Ishizu,
Carsten O. Daub,
Alexander Lezhava,
Erik Arner,
Yoshihide Hayashizaki,
Yuki Kawai,
Yasushi Kogo:
Optimization of turn-back primers in isothermal amplification.
BIBM Workshops 2011: 909-911 |
| 2009 |
| 12 |  | Peter J. A. Cock,
Tiago Antao,
Jeffrey T. Chang,
Brad A. Chapman,
Cymon J. Cox,
Andrew Dalke,
Iddo Friedberg,
Thomas Hamelryck,
Frank Kauff,
Bartek Wilczynski,
Michiel J. L. de Hoon:
Biopython: freely available Python tools for computational molecular biology and bioinformatics.
Bioinformatics 25(11): 1422-1423 (2009) |
| 11 |  | Takehiro Hashimoto,
Michiel J. L. de Hoon,
Sean M. Grimmond,
Carsten O. Daub,
Yoshihide Hayashizaki,
Geoffrey J. Faulkner:
Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite.
Bioinformatics 25(19): 2613-2614 (2009) |
| 2008 |
| 10 |  | Nicolas Sierro,
Yuko Makita,
Michiel J. L. de Hoon,
Kenta Nakai:
DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information.
Nucleic Acids Research 36(Database-Issue): 93-96 (2008) |
| 2007 |
| 9 |  | Yuko Makita,
Michiel J. L. de Hoon,
Antoine Danchin:
Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes.
BMC Bioinformatics 8: (2007) |
| 2005 |
| 8 |  | Yuko Makita,
Michiel J. L. de Hoon,
Naotake Ogasawara,
Satoru Miyano,
Kenta Nakai:
Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis.
Pacific Symposium on Biocomputing 2005 |
| 7 |  | Michiel J. L. de Hoon,
Dennis Vitkup:
Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes.
Systems Biology and Regulatory Genomics 2005: 62-69 |
| 6 |  | Michiel J. L. de Hoon,
Yuko Makita,
Kenta Nakai,
Satoru Miyano:
Prediction of Transcriptional Terminators in Bacillus subtilis and Related Species.
PLoS Computational Biology 1(3): (2005) |
| 2004 |
| 5 |  | Michiel J. L. de Hoon,
Yuko Makita,
Seiya Imoto,
Kazuo Kobayashi,
Naotake Ogasawara,
Kenta Nakai,
Satoru Miyano:
Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data.
ISMB/ECCB (Supplement of Bioinformatics) 2004: 101-108 |
| 4 |  | Michiel J. L. de Hoon,
Seiya Imoto,
Kazuo Kobayashi,
Naotake Ogasawara,
Satoru Miyano:
Predicting the Operon Structure of Bacillus subtilis Using Operon Length, Intergene Distance, and Gene Expression Information.
Pacific Symposium on Biocomputing 2004: 276-287 |
| 2003 |
| 3 |  | Michiel J. L. de Hoon,
Seiya Imoto,
Kazuo Kobayashi,
Naotake Ogasawara,
Satoru Miyano:
Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations.
Pacific Symposium on Biocomputing 2003: 17-28 |
| 2002 |
| 2 |  | Michiel J. L. de Hoon,
Seiya Imoto,
Satoru Miyano:
Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data Using Differential Equations.
Discovery Science 2002: 267-274 |
| 1 |  | Michiel J. L. de Hoon,
Seiya Imoto,
Satoru Miyano:
Statistical analysis of a small set of time-ordered gene expression data using linear splines.
Bioinformatics 18(11): 1477-1485 (2002) |