Ivo L. Hofacker

	2012
50		Ivo L. Hofacker, Christian M. Reidys, Peter F. Stadler: Symmetric circular matchings and RNA folding. Discrete Mathematics 312(1): 100-112 (2012)
	2011
49		Hakim Tafer, Fabian Amman, Florian Eggenhofer, Peter F. Stadler, Ivo L. Hofacker: Fast accessibility-based prediction of RNA-RNA interactions. Bioinformatics 27(14): 1934-1940 (2011)
48		Christian Höner zu Siederdissen, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker: A folding algorithm for extended RNA secondary structures. Bioinformatics [ISMB/ECCB] 27(13): 129-136 (2011)
47		Andreas R. Gruber, Jörg Fallmann, Franz Kratochvill, Pavel Kovarik, Ivo L. Hofacker: AREsite: a database for the comprehensive investigation of AU-rich elements. Nucleic Acids Research 39(Database-Issue): 66-69 (2011)
46		Florian Eggenhofer, Hakim Tafer, Peter F. Stadler, Ivo L. Hofacker: RNApredator: fast accessibility-based prediction of sRNA targets. Nucleic Acids Research 39(Web-Server-Issue): 149-154 (2011)
45		Jan Gorodkin, Ivo L. Hofacker: From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs. PLoS Computational Biology 7(8): (2011)
	2010
44		Andreas R. Gruber, Stephan H. F. Bernhart, You Zhou, Ivo L. Hofacker: RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures. GCB 2010: 11-20
43		Rolf Backofen, Hamidreza Chitsaz, Ivo L. Hofacker, Süleyman Cenk Sahinalp, Peter F. Stadler: Session Introduction. Pacific Symposium on Biocomputing 2010: 54-56
42		Andreas R. Gruber, Sven Findeiß, Stefan Washietl, Ivo L. Hofacker, Peter F. Stadler: RNAz 2.0: Improved Noncoding RNA Detection. Pacific Symposium on Biocomputing 2010: 69-79
41		Ulrike Mückstein, Germán G. Leparc, Alexandra Posekany, Ivo L. Hofacker, David P. Kreil: Hybridization thermodynamics of NimbleGen Microarrays. BMC Bioinformatics 11: 35 (2010)
40		Christian Höner zu Siederdissen, Ivo L. Hofacker: Discriminatory power of RNA family models. Bioinformatics 26(18): (2010)
39		Hakim Tafer, Stephanie Kehr, Jana Hertel, Ivo L. Hofacker, Peter F. Stadler: RNAsnoop: efficient target prediction for H/ACA snoRNAs. Bioinformatics 26(5): 610-616 (2010)
	2009
38		Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker: 2D Projections of RNA Folding Landscapes. GCB 2009: 11-20
	2008
37		Ulrike Mückstein, Hakim Tafer, Stephan H. F. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker: Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics. BIRD 2008: 114-127
36		Stephan H. F. Bernhart, Ivo L. Hofacker, Sebastian Will, Andreas R. Gruber, Peter F. Stadler: RNAalifold: improved consensus structure prediction for RNA alignments. BMC Bioinformatics 9: (2008)
35		Andreas R. Gruber, Stephan H. F. Bernhart, Ivo L. Hofacker, Stefan Washietl: Strategies for measuring evolutionary conservation of RNA secondary structures. BMC Bioinformatics 9: (2008)
34		Jana Hertel, Ivo L. Hofacker, Peter F. Stadler: SnoReport: computational identification of snoRNAs with unknown targets. Bioinformatics 24(2): 158-164 (2008)
33		Hakim Tafer, Ivo L. Hofacker: RNAplex: a fast tool for RNA-RNA interaction search. Bioinformatics 24(22): 2657-2663 (2008)
32		Radka Svobodová Vareková, Ivan Bradác, Martin Plchút, Michal Skrdla, Michael Wacenovsky, Helmuth Mahr, Georg Mayer, Herbert Tanner, Hermann Brugger, Josef Withalm, Peter Lederer, Heinrich Huber, Gerhard Gierlinger, Ronald Graf, Hakim Tafer, Ivo L. Hofacker, Peter Schuster, Martin Polcík: www.rnaworkbench.com: A new program for analyzing RNA interference. Computer Methods and Programs in Biomedicine 90(1): 89-94 (2008)
31		Andreas R. Gruber, Ronny Lorenz, Stephan H. F. Bernhart, Richard Neuböck, Ivo L. Hofacker: The Vienna RNA Websuite. Nucleic Acids Research 36(Web-Server-Issue): 70-74 (2008)
	2007
30		Christoph Flamm, Ivo L. Hofacker, Bärbel M. R. Stadler, Peter F. Stadler: Saddles and Barrier in Landscapes of Generalized Search Operators. FOGA 2007: 194-212
29		Andreas R. Gruber, Richard Neuböck, Ivo L. Hofacker, Stefan Washietl: The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures. Nucleic Acids Research 35(Web-Server-Issue): 335-338 (2007)
28		Sebastian Will, Kristin Reiche, Ivo L. Hofacker, Peter F. Stadler, Rolf Backofen: Inferring Noncoding RNA Families and Classes by Means of Genome-Scale Structure-Based Clustering. PLoS Computational Biology 3(4): (2007)
	2006
27		Axel Mosig, Ivo L. Hofacker, Peter F. Stadler: Comparative Analysis of Cyclic Sequences: Viroids and other Small Circular RNAs. German Conference on Bioinformatics 2006: 93-102
26		Stephan H. F. Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker: Partition function and base pairing probabilities of RNA heterodimers. Algorithms for Molecular Biology 1: (2006)
25		Christian V. Forst, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler: Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation. BMC Bioinformatics 7: 67 (2006)
24		Ivo L. Hofacker, Peter F. Stadler: Memory efficient folding algorithms for circular RNA secondary structures. Bioinformatics 22(10): 1172-1176 (2006)
23		Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker: Thermodynamics of RNA-RNA binding. Bioinformatics 22(10): 1177-1182 (2006)
22		Stephan H. F. Bernhart, Ivo L. Hofacker, Peter F. Stadler: Local RNA base pairing probabilities in large sequences. Bioinformatics 22(5): 614-615 (2006)
21		Christian Heine, Gerik Scheuermann, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler: Visualization of Barrier Tree Sequences. IEEE Trans. Vis. Comput. Graph. 12(5): 781-788 (2006)
20		Paul Wei-Che Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li-Zen Lin, Ann-Ping Tsou, Ching-Ping Tseng, Peter F. Stadler, Stefan Washietl, Ivo L. Hofacker: miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. Nucleic Acids Research 34(Database-Issue): 135-139 (2006)
	2005
19		Ivo L. Hofacker, Peter F. Stadler: Memory Efficient Folding Algorithms for Circular RNA Secondary Structures. German Conference on Bioinformatics 2005: 15-25
18		Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker: Thermodynamics of RNA-RNA Binding. German Conference on Bioinformatics 2005: 3-13
17		Roman R. Stocsits, Ivo L. Hofacker, Claudia Fried, Peter F. Stadler: Multiple sequence alignments of partially coding nucleic acid sequences. BMC Bioinformatics 6: 160 (2005)
	2004
16		C. Thurner, Ivo L. Hofacker, Peter F. Stadler: Conserved RNA Pseudoknots. German Conference on Bioinformatics 2004: 207-216
15		Ivo L. Hofacker, Peter F. Stadler: The Partition Function Variant of Sankoff's Algorithm. International Conference on Computational Science 2004: 728-735
14		Ivo L. Hofacker, Peter F. Stadler, Roman R. Stocsits: Conserved RNA secondary structures in viral genomes: a survey. Bioinformatics 20(10): 1495-1499 (2004)
13		Ivo L. Hofacker, Stephan H. F. Bernhart, Peter F. Stadler: Alignment of RNA base pairing probability matrices. Bioinformatics 20(14): 2222-2227 (2004)
12		Ivo L. Hofacker, Barbara Priwitzer, Peter F. Stadler: Prediction of locally stable RNA secondary structures for genome-wide surveys. Bioinformatics 20(2): 186-190 (2004)
11		Christina Witwer, Ivo L. Hofacker, Peter F. Stadler: Prediction of Consensus RNA Secondary Structures Including Pseudoknots. IEEE/ACM Trans. Comput. Biology Bioinform. 1(2): 66-77 (2004)
	2003
10		Ivo L. Hofacker, Peter F. Stadler, Roman R. Stocsits: Conserved RNA secondary structures in viral genomes: A survey. German Conference on Bioinformatics 2003: 57-62
9		Ivo L. Hofacker: Vienna RNA secondary structure server. Nucleic Acids Research 31(13): 3429-3431 (2003)
	2002
8		Ulrike Mückstein, Ivo L. Hofacker, Peter F. Stadler: Stochastic pairwise alignments. ECCB 2002: 153-160
	2000
7		Martin Fekete, Ivo L. Hofacker, Peter F. Stadler: Prediction of RNA Base Pairing Probabilities on Massively Parallel Computers. Journal of Computational Biology 7(1-2): 171-182 (2000)
	1999
6		G. Weberndorfer, Ivo L. Hofacker, Peter F. Stadler: An efficient potential for protein sequence design. German Conference on Bioinformatics 1999: 107-112
5		Roman R. Stocsits, Ivo L. Hofacker, Peter F. Stadler: Conserved secondary structures in hepatitis B virus DNA. German Conference on Bioinformatics 1999: 73-79
4		Ivo L. Hofacker, Peter F. Stadler: Automatic Detection of Conserved Base Pairing Patterns in RNA Virus Genomes. Computers & Chemistry 23(3-4): 401-414 (1999)
	1998
3		Ivo L. Hofacker, Peter Schuster, Peter F. Stadler: Combinatorics of RNA Secondary Structures. Discrete Applied Mathematics 88(1-3): 207-237 (1998)
	1996
2		Jan Cupal, Ivo L. Hofacker, Peter F. Stadler: Dynamic Programming Algorithm for the Density of States of RNA Secondary Structures. German Conference on Bioinformatics 1996: 184-186
1		Ivo L. Hofacker, Martijn A. Huynen, Peter F. Stadler, Paul E. Stolorz: Knowledge Discovery in RNA Sequence Families of HIV Using Scalable Computers. KDD 1996: 20-25

Coauthor Index

1	Fabian Amman	[49]
2	Rolf Backofen	[28] [43]
3	Stephan H. F. Bernhart	[13] [18] [22] [23] [26] [31] [35] [36] [37] [44] [48]
4	Ivan Bradác	[32]
5	Hermann Brugger	[32]
6	Hamidreza Chitsaz	[43]
7	Jan Cupal	[2]
8	Florian Eggenhofer	[46] [49]
9	Jörg Fallmann	[47]
10	Martin Fekete	[7]
11	Sven Findeiß	[42]
12	Christoph Flamm	[21] [25] [26] [30] [38]
13	Christian V. Forst	[25]
14	Claudia Fried	[17]
15	Gerhard Gierlinger	[32]
16	Jan Gorodkin	[45]
17	Ronald Graf	[32]
18	Andreas R. Gruber	[29] [31] [35] [36] [42] [44] [47]
19	Jörg Hackermüller	[18] [23]
20	Christian Heine	[21]
21	Maribel Hernandez-Rosales	[37]
22	Jana Hertel	[34] [39]
23	Paul Wei-Che Hsu	[20]
24	Sheng-Da Hsu	[20]
25	Hsien-Da Huang	[20]
26	Heinrich Huber	[32]
27	Martijn A. Huynen	[1]
28	Stephanie Kehr	[39]
29	Pavel Kovarik	[47]
30	Franz Kratochvill	[47]
31	David P. Kreil	[41]
32	Peter Lederer	[32]
33	Germán G. Leparc	[41]
34	Li-Zen Lin	[20]
35	Ronny Lorenz	[31] [38]
36	Helmuth Mahr	[32]
37	Georg Mayer	[32]
38	Axel Mosig	[27]
39	Ulrike Mückstein	[8] [18] [23] [26] [37] [41]
40	Richard Neuböck	[29] [31]
41	Martin Plchút	[32]
42	Martin Polcík	[32]
43	Alexandra Posekany	[41]
44	Barbara Priwitzer	[12]
45	Kristin Reiche	[28]
46	Christian M. Reidys	[50]
47	Süleyman Cenk Sahinalp	[43]
48	Gerik Scheuermann	[21]
49	Peter Schuster (Peter M. Schuster)	[3] [32]
50	Christian Höner zu Siederdissen	[40] [48]
51	Michal Skrdla	[32]
52	Bärbel M. R. Stadler	[30]
53	Peter F. Stadler	[1] [2] [3] [4] [5] [6] [7] [8] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [30] [34] [36] [37] [39] [42] [43] [46] [48] [49] [50]
54	Roman R. Stocsits	[5] [10] [14] [17]
55	Paul E. Stolorz	[1]
56	Hakim Tafer	[18] [23] [26] [32] [33] [37] [39] [46] [49]
57	Herbert Tanner	[32]
58	C. Thurner	[16]
59	Ching-Ping Tseng	[20]
60	Ann-Ping Tsou	[20]
61	Radka Svobodová Vareková	[32]
62	Jörg Vogel	[37]
63	Michael Wacenovsky	[32]
64	Stefan Washietl	[20] [29] [35] [42]
65	G. Weberndorfer	[6]
66	Sebastian Will	[28] [36]
67	Josef Withalm	[32]
68	Christina Witwer	[11]
69	You Zhou	[44]

Last update Thu May 31 18:55:10 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page