 | 2011 |
| 13 |  | Nathan W. Lemons,
Bin Hu,
William S. Hlavacek:
Hierarchical graphs for rule-based modeling of biochemical systems.
BMC Bioinformatics 12: 45 (2011) |
| 12 |  | Fangping Mu,
Clifford J. Unkefer,
Pat J. Unkefer,
William S. Hlavacek:
Prediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds.
Bioinformatics 27(11): 1537-1545 (2011) |
| 2010 |
| 11 |  | Joshua Colvin,
Michael I. Monine,
Ryan N. Gutenkunst,
William S. Hlavacek,
Daniel D. Von Hoff,
Richard G. Posner:
RuleMonkey: software for stochastic simulation of rule-based models.
BMC Bioinformatics 11: 404 (2010) |
| 10 |  | Amy L. Bauer,
William S. Hlavacek,
Pat J. Unkefer,
Fangping Mu:
Using Sequence-Specific Chemical and Structural Properties of DNA to Predict Transcription Factor Binding Sites.
PLoS Computational Biology 6(11): (2010) |
| 2009 |
| 9 |  | Bin Hu,
G. Matthew Fricke,
James R. Faeder,
Richard G. Posner,
William S. Hlavacek:
GetBonNie for building, analyzing and sharing rule-based models.
Bioinformatics 25(11): 1457-1460 (2009) |
| 8 |  | Joshua Colvin,
Michael I. Monine,
James R. Faeder,
William S. Hlavacek,
Daniel D. Von Hoff,
Richard G. Posner:
Simulation of large-scale rule-based models.
Bioinformatics 25(7): 910-917 (2009) |
| 2007 |
| 7 |  | Fangping Mu,
Robert F. Williams,
Clifford J. Unkefer,
Pat J. Unkefer,
James R. Faeder,
William S. Hlavacek:
Carbon-fate maps for metabolic reactions.
Bioinformatics 23(23): 3193-3199 (2007) |
| 2006 |
| 6 |  | Fangping Mu,
Pat J. Unkefer,
Clifford J. Unkefer,
William S. Hlavacek:
Prediction of oxidoreductase-catalyzed reactions based on atomic properties of metabolites.
Bioinformatics 22(24): 3082-3088 (2006) |
| 5 |  | Michael L. Blinov,
Jin Yang,
James R. Faeder,
William S. Hlavacek:
Graph Theory for Rule-Based Modeling of Biochemical Networks.
T. Comp. Sys. Biology: 89-106 (2006) |
| 2005 |
| 4 |  | James R. Faeder,
Michael L. Blinov,
William S. Hlavacek:
Graphical rule-based representation of signal-transduction networks.
SAC 2005: 133-140 |
| 3 |  | James R. Faeder,
Michael L. Blinov,
Byron Goldstein,
William S. Hlavacek:
Rule-based modeling of biochemical networks.
Complexity 10(4): 22-41 (2005) |
| 2004 |
| 2 |  | Michael L. Blinov,
James R. Faeder,
Byron Goldstein,
William S. Hlavacek:
BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains.
Bioinformatics 20(17): 3289-3291 (2004) |
| 1998 |
| 1 |  | William S. Hlavacek,
Michael A. Savageau:
Method for determining natural design principles of biological control circuits.
Journal of Intelligent and Fuzzy Systems 6(1): 147-160 (1998) |