Martin C. Herbordt

	2011
53		Matt Chiu, Md. Ashfaquzzaman Khan, Martin C. Herbordt: Efficient Calculation of Pairwise Nonbonded Forces. FCCM 2011: 73-76
52		Md. Ashfaquzzaman Khan, Martin C. Herbordt: Parallel discrete molecular dynamics simulation with speculation and in-order commitment. J. Comput. Physics 230(17): 6563-6582 (2011)
	2010
51		Atabak Mahram, Martin C. Herbordt: Fast and accurate NCBI BLASTP: acceleration with multiphase FPGA-based prefiltering. ICS 2010: 73-82
50		Bharat Sukhwani, Martin C. Herbordt: Fast binding site mapping using GPUs and CUDA. IPDPS Workshops 2010: 1-8
49		Jin H. Park, Yunfei Qiu, Martin C. Herbordt: CAAD BLASTn: Accelerated NCBI BLASTn with FPGA prefiltering. ISCAS 2010: 3797-3800
48		Bharat Sukhwani, Martin C. Herbordt: FPGA acceleration of rigid-molecule docking codes. IET Computers & Digital Techniques 4(3): 184-195 (2010)
47		Matt Chiu, Martin C. Herbordt: Molecular Dynamics Simulations on High-Performance Reconfigurable Computing Systems. TRETS 3(4): 23 (2010)
	2009
46		Martin C. Herbordt, Md. Ashfaquzzaman Khan, Tony Dean: Parallel Discrete Event Simulation of Molecular Dynamics Through Event-Based Decomposition. ASAP 2009: 129-136
45		Jin H. Park, Yunfei Qiu, Martin C. Herbordt: CAAD BLASTP: NCBI BLASTP Accelerated with FPGA-Based Accelerated Pre-Filtering. FCCM 2009: 81-87
44		Matt Chiu, Martin C. Herbordt: Efficient particle-pair filtering for acceleration of molecular dynamics simulation. FPL 2009: 345-352
43		Bharat Sukhwani, Martin C. Herbordt: GPU acceleration of a production molecular docking code. GPGPU 2009: 19-27
42		Bharat Sukhwani, Martin C. Herbordt: FPGA-based acceleration of CHARMM-potential minimization. SC-HPRCTA 2009: 1-10
41		Tom Van Court, Martin C. Herbordt: Elements of High-Performance Reconfigurable Computing. Advances in Computers 75: 113-157 (2009)
	2008
40		Martin C. Herbordt, Francois Kosie, Josh Model: An Efficient O(1) Priority Queue for Large FPGA-Based Discrete Event Simulations of Molecular Dynamics. FCCM 2008: 248-257
39		Bharat Sukhwani, Martin C. Herbordt: Acceleration of a production rigid molecule docking code. FPL 2008: 341-346
38		Martin C. Herbordt, Yongfeng Gu, Tom Van Court, Josh Model, Bharat Sukhwani, Matt Chiu: Computing Models for FPGA-Based Accelerators. Computing in Science and Engineering 10(6): 35-45 (2008)
37		Yongfeng Gu, Tom Van Court, Martin C. Herbordt: Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations. Parallel Computing 34(4-5): 261-277 (2008)
36		Yongfeng Gu, Tom Van Court, Martin C. Herbordt: Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations. Parallel Computing 34(4-5): 261-277 (2008)
	2007
35		Yongfeng Gu, Martin C. Herbordt: FPGA-Based Multigrid Computation for Molecular Dynamics Simulations. FCCM 2007: 117-126
34		Josh Model, Martin C. Herbordt: Discrete Event Simulation of Molecular Dynamics with Configurable Logic. FPL 2007: 151-158
33		Martin C. Herbordt, Tom Van Court, Yongfeng Gu, Bharat Sukhwani, Al Conti, Josh Model, Douglas DiSabello: Achieving High Performance with FPGA-Based Computing. IEEE Computer 40(3): 50-57 (2007)
32		Tom Van Court, Martin C. Herbordt: Families of FPGA-based accelerators for approximate string matching. Microprocessors and Microsystems 31(2): 135-145 (2007)
31		Martin C. Herbordt, Josh Model, Bharat Sukhwani, Yongfeng Gu, Tom Van Court: Single pass streaming BLAST on FPGAs. Parallel Computing 33(10-11): 741-756 (2007)
	2006
30		Martin C. Herbordt, Josh Model, Yongfeng Gu, Bharat Sukhwani, Tom Van Court: Single Pass, BLAST-Like, Approximate String Matching on FPGAs. FCCM 2006: 217-226
29		Tom Van Court, Martin C. Herbordt: Application-Specific Memory Interleaving Enables High Performance in FPGA-based Grid Computations. FCCM 2006: 305-306
28		Yongfeng Gu, Tom Van Court, Martin C. Herbordt: Integrating FPGA Acceleration into the Protomol Molecular Dynamics Code: Preliminary Report. FCCM 2006: 315-316
27		Tom Van Court, Martin C. Herbordt: Sizing of Processing Arrays for FPGA-Based Computation. FPL 2006: 1-6
26		Tom Van Court, Martin C. Herbordt: Application-Specific Memory Interleaving for FPGA-Based Grid Computations: A General Design Technique. FPL 2006: 1-7
25		Yongfeng Gu, Tom Van Court, Martin C. Herbordt: Improved Interpolation and System Integration for FPGA-Based Molecular Dynamics Simulations. FPL 2006: 1-8
24		Tom Van Court, Yongfeng Gu, Vikas Mundada, Martin C. Herbordt: Rigid Molecule Docking: FPGA Reconfiguration for Alternative Force Laws. EURASIP J. Adv. Sig. Proc. 2006: (2006)
	2005
23		Tom Van Court, Yongfeng Gu, Martin C. Herbordt: Three-Dimensional Template Correlation: Object Recognition in 3D Voxel Data. CAMP 2005: 153-158
22		Yongfeng Gu, Tom Van Court, Douglas DiSabello, Martin C. Herbordt: Preliminary Report: FPGA Acceleration of Molecular Dynamics Computations. FCCM 2005: 269-270
21		Yongfeng Gu, Tom Van Court, Martin C. Herbordt: Accelerating Molecular Dynamics Simulations With Configurable Circuits. FPL 2005: 475-480
20		Tom Van Court, Martin C. Herbordt: LAMP: A Tool Suite for Families of FPGA-Based Application Accelerators. FPL 2005: 612-617
	2004
19		Tom Van Court, Martin C. Herbordt: Families of FPGA-Based Algorithms for Approximate String Matching. ASAP 2004: 354-364
18		Tom Van Court, Yongfeng Gu, Martin C. Herbordt: FPGA Acceleration of Rigid Molecule Interactions. FCCM 2004: 300-301
17		Albert A. Conti, Tom Van Court, Martin C. Herbordt: Processing Repetitive Sequence Structures with Mismatches at Streaming Rate. FPL 2004: 1080-1083
16		Tom Van Court, Yongfeng Gu, Martin C. Herbordt: FPGA Acceleration of Rigid Molecule Interactions. FPL 2004: 862-867
15		Martin C. Herbordt, Jade Cravy, Honghai Zhang: Array control for high-performance SIMD systems. J. Parallel Distrib. Comput. 64(3): 400-413 (2004)
14		Tom Van Court, Martin C. Herbordt, Richard J. Barton: Case study of a functional genomics application for an FPGA-based coprocessor. Microprocessors and Microsystems 28(5-6): 213-222 (2004)
	2003
13		Tom Van Court, Martin C. Herbordt, Richard J. Barton: Case Study of a Functional Genomics Application. FPL 2003: 365-374
	2000
12		Martin C. Herbordt, Honghai Zhang, Calvin Lin, Hong Rao, Jade Cravy: Control for High-Speed PE Arrays. ASAP 2000: 247-257
11		Martin C. Herbordt, Jade Cravy, Honghai Zhang, Calvin Lin, Hong Rao: An Array Control Unit for High Performance SIMD Arrays. CAMP 2000: 293-301
10		Martin C. Herbordt, Jade Cravy, Renoy Sam, Owais Kidwai, Calvin Lin: A System for Evaluating Performance and Cost of SIMD Array Designs. J. Parallel Distrib. Comput. 60(2): 217-246 (2000)
	1999
9		Bojana Obrenic, Martin C. Herbordt, Arnold L. Rosenberg, Charles C. Weems: Using Emulations to Enhance the Performance of Parallel Architectures. IEEE Trans. Parallel Distrib. Syst. 10(10): 1067-1081 (1999)
	1997
8		Martin C. Herbordt, Owais Kidwai, Charles C. Weems: Preprototyping SIMD Coprocessors Using Virtual Machine Emulation and Trace Compilation. SIGMETRICS 1997: 88-99
	1995
7		Martin C. Herbordt, Charles C. Weems: An empirical study of datapath, memory hierarchy, and network in SIMD array architectures. ICCD 1995: 546-551
6		Martin C. Herbordt, Charles C. Weems: Experimental Analysis of Some SIMD Array Memory Hierarchies. ICPP (1) 1995: 210-214
5		Martin C. Herbordt, Charles C. Weems: Enpassant: An Environment for Evaluating Massively Parallel Array Architectures for Spatially Mapped Applications. IJPRAI 9(2): 175-200 (1995)
	1994
4		Martin C. Herbordt, James C. Corbett, Charles C. Weems, John Spalding: Practical Algorithms for Online Routing on Fixed and Reconfigurable Meshes. J. Parallel Distrib. Comput. 20(3): 341-356 (1994)
	1992
3		Martin C. Herbordt, Charles C. Weems, Michael J. Scudder: Nonuniform region processing on SIMD arrays using the coterie network. Mach. Vis. Appl. 5(2): 105-125 (1992)
	1991
2		Martin C. Herbordt, Charles C. Weems: Multi-associativity: A Framework for Solving Multiple Non-uniform Problem Instances Simultaneously on SIMD Arrays. ICPP (3) 1991: 219-223
	1990
1		Martin C. Herbordt, Charles C. Weems, James C. Corbett: Message-Passing Algorithms for a SIMD Torus with Coteries. SPAA 1990: 11-20

Coauthor Index

1	Richard J. Barton	[13] [14]
2	Matt Chiu	[38] [44] [47] [53]
3	Al Conti	[33]
4	Albert A. Conti	[17]
5	James C. Corbett	[1] [4]
6	Tom Van Court	[13] [14] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [36] [37] [38] [41]
7	Jade Cravy	[10] [11] [12] [15]
8	Tony Dean	[46]
9	Douglas DiSabello	[22] [33]
10	Yongfeng Gu	[16] [18] [21] [22] [23] [24] [25] [28] [30] [31] [33] [35] [36] [37] [38]
11	Md. Ashfaquzzaman Khan	[46] [52] [53]
12	Owais Kidwai	[8] [10]
13	Francois Kosie	[40]
14	Calvin Lin	[10] [11] [12]
15	Atabak Mahram	[51]
16	Josh Model	[30] [31] [33] [34] [38] [40]
17	Vikas Mundada	[24]
18	Bojana Obrenic	[9]
19	Jin H. Park	[45] [49]
20	Yunfei Qiu	[45] [49]
21	Hong Rao	[11] [12]
22	Arnold L. Rosenberg	[9]
23	Renoy Sam	[10]
24	Michael J. Scudder	[3]
25	John Spalding	[4]
26	Bharat Sukhwani	[30] [31] [33] [38] [39] [42] [43] [48] [50]
27	Charles C. Weems	[1] [2] [3] [4] [5] [6] [7] [8] [9]
28	Honghai Zhang	[11] [12] [15]

Colors in the list of coauthors

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