Jacques van Helden

	2012
27		Frédérique Lisacek, Patrick Koks, Pascale Berthault, Grégoire Rossier, Guy Bottu, Jacques van Helden, Jean Sylvestre, Jean-Pierre Kraehenbuhl, Jack A. M. Leunissen: eBiomics - A Website Promoting Good Practices and Specific Methods for using Bioinformatics Resources. BIOINFORMATICS 2012: 386-391
	2011
26		Karoline Faust, Didier Croes, Jacques van Helden: Prediction of metabolic pathways from genome-scale metabolic networks. Biosystems 105(2): 109-121 (2011)
25		Morgane Thomas-Chollier, Matthieu Defrance, Alejandra Medina-Rivera, Olivier Sand, Carl Herrmann, Denis Thieffry, Jacques van Helden: RSAT 2011: regulatory sequence analysis tools. Nucleic Acids Research 39(Web-Server-Issue): 86-91 (2011)
	2010
24		Karoline Faust, Pierre Dupont, Jérôme Callut, Jacques van Helden: Pathway discovery in metabolic networks by subgraph extraction. Bioinformatics 26(9): 1211-1218 (2010)
	2009
23		Kevin Kontos, Bruno André, Jacques van Helden, Gianluca Bontempi: Gaussian Graphical Models to Infer Putative Genes Involved in Nitrogen Catabolite Repression in S. cerevisiae. EvoBIO 2009: 13-24
22		Matthieu Defrance, Jacques van Helden: info-gibbs: a motif discovery algorithm that directly optimizes information content during sampling. Bioinformatics 25(20): 2715-2722 (2009)
21		Olivier Sand, Morgane Thomas-Chollier, Jacques van Helden: Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl. Bioinformatics 25(20): 2739-2740 (2009)
20		Karoline Faust, Didier Croes, Jacques van Helden: In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. Bioinformatics 25(23): 3202-3205 (2009)
	2008
19		Rekin's Janky, Jacques van Helden: Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution. BMC Bioinformatics 9: (2008)
18		Gipsi Lima-Mendez, Jacques van Helden, Ariane Toussaint, Raphaël Leplae: Prophinder: a computational tool for prophage prediction in prokaryotic genomes. Bioinformatics 24(6): 863-865 (2008)
17		Morgane Thomas-Chollier, Olivier Sand, Jean-Valéry Turatsinze, Rekin's Janky, Matthieu Defrance, Eric Vervisch, Sylvain Brohée, Jacques van Helden: RSAT: regulatory sequence analysis tools. Nucleic Acids Research 36(Web-Server-Issue): 119-127 (2008)
16		Sylvain Brohée, Karoline Faust, Gipsi Lima-Mendez, Olivier Sand, Rekin's Janky, Gilles Vanderstocken, Yves Deville, Jacques van Helden: NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways. Nucleic Acids Research 36(Web-Server-Issue): 444-451 (2008)
	2007
15		Najib Naamane, Jacques van Helden, Decio L. Eizirik: In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells. BMC Bioinformatics 8: (2007)
	2006
14		Sylvain Brohée, Jacques van Helden: Evaluation of clustering algorithms for protein-protein interaction networks. BMC Bioinformatics 7: 488 (2006)
	2005
13		Didier Gonze, Sylvie Pinloche, Olivier Gascuel, Jacques van Helden: Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs. Bioinformatics 21(17): 3490-3500 (2005)
12		Ulrich Güldener, Martin Münsterkötter, Gabi Kastenmüller, Normann Strack, Jacques van Helden, Christian Lemer, J. Richelles, Shoshana J. Wodak, J. García-Martínez, J. E. Pérez-Ortín, Holger Michael, Andreas Kaps, E. Talla, Bernard Dujon, Bruno André, J. L. Souciet, J. De Montigny, E. Bon, C. Gaillardin, Hans-Werner Mewes: CYGD: the Comprehensive Yeast Genome Database. Nucleic Acids Research 33(Database-Issue): 364-368 (2005)
11		Didier Croes, Fabian Couche, Shoshana J. Wodak, Jacques van Helden: Metabolic PathFinding: inferring relevant pathways in biochemical networks. Nucleic Acids Research 33(Web-Server-Issue): 326-330 (2005)
	2004
10		N. Simonis, Shoshana J. Wodak, G. N. Cohen, Jacques van Helden: Combining pattern discovery and discriminant analysis to predict gene co-regulation. Bioinformatics 20(15): 2370-2379 (2004)
9		Jacques van Helden: Metrics for comparing regulatory sequences on the basis of pattern counts. Bioinformatics 20(3): 399-406 (2004)
	2003
8		Yves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak: An Overview of Data Models for the Analysis of Biochemical Pathways. CMSB 2003: 174
7		Yves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak: An overview of data models for the analysis of biochemical pathways. Briefings in Bioinformatics 4(3): 246-259 (2003)
6		Jacques van Helden: Regulatory Sequence Analysis Tools. Nucleic Acids Research 31(13): 3593-3596 (2003)
	2001
5		Jacques van Helden, Avi Naim, Christian Lemer, Renato Mancuso, Matthew Eldridge, Shoshana J. Wodak: From Molecular Activities and Processes to Biological Function. Briefings in Bioinformatics 2(1): 81-107 (2001)
4		Michael Schroeder, David Gilbert, Jacques van Helden, Penny Noy: Approaches to visualisation in bioinformatics: from dendrograms to Space Explorer. Inf. Sci. 139(1-2): 19-57 (2001)
	2000
3		Jacques van Helden, David Gilbert, Lorenz Wernisch, Michael Schroeder, Shoshana J. Wodak: Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression Data. JOBIM 2000: 147-164
	1999
2		Jacques van Helden, David Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew Eldridge, Kirill Degtyarenko, Shoshana J. Wodak: Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database. German Conference on Bioinformatics 1999: 227-229
1		Heladia Salgado, Alberto Santos-Zavaleta, Ulises Garza-Ramos, Jacques van Helden, Edgar Díaz-Peredo, Julio Collado-Vides: RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli. Nucleic Acids Research 27(1): 59-60 (1999)

Coauthor Index

1	Bruno André	[12] [23]
2	Pascale Berthault	[27]
3	E. Bon	[12]
4	Gianluca Bontempi	[23]
5	Guy Bottu	[27]
6	Sylvain Brohée	[14] [16] [17]
7	Jérôme Callut	[24]
8	G. N. Cohen	[10]
9	Julio Collado-Vides	[1]
10	Fabian Couche	[11]
11	Didier Croes	[11] [20] [26]
12	Matthieu Defrance	[17] [22] [25]
13	Kirill Degtyarenko	[2]
14	Yves Deville	[7] [8] [16]
15	Edgar Díaz-Peredo	[1]
16	Bernard Dujon	[12]
17	Pierre Dupont	[24]
18	Decio L. Eizirik	[15]
19	Matthew Eldridge	[2] [5]
20	Karoline Faust	[16] [20] [24] [26]
21	C. Gaillardin	[12]
22	J. García-Martínez	[12]
23	Ulises Garza-Ramos	[1]
24	Olivier Gascuel	[13]
25	David Gilbert (David R. Gilbert)	[2] [3] [4] [7] [8]
26	Didier Gonze	[13]
27	Ulrich Güldener	[12]
28	Carl Herrmann	[25]
29	Rekin's Janky	[16] [17] [19]
30	Andreas Kaps	[12]
31	Gabi Kastenmüller	[12]
32	Patrick Koks	[27]
33	Kevin Kontos	[23]
34	Jean-Pierre Kraehenbuhl	[27]
35	Christian Lemer	[5] [12]
36	Raphaël Leplae	[18]
37	Jack A. M. Leunissen	[27]
38	Gipsi Lima-Mendez	[16] [18]
39	Frédérique Lisacek	[27]
40	Renato Mancuso	[2] [5]
41	Alejandra Medina-Rivera	[25]
42	Hans-Werner Mewes	[12]
43	Holger Michael	[12]
44	J. De Montigny	[12]
45	Martin Münsterkötter	[12]
46	Najib Naamane	[15]
47	Avi Naim	[5]
48	Penny Noy	[4]
49	J. E. Pérez-Ortín	[12]
50	Sylvie Pinloche	[13]
51	J. Richelles	[12]
52	Grégoire Rossier	[27]
53	Heladia Salgado	[1]
54	Olivier Sand	[16] [17] [21] [25]
55	Alberto Santos-Zavaleta	[1]
56	Michael Schroeder	[3] [4]
57	N. Simonis	[10]
58	J. L. Souciet	[12]
59	Normann Strack	[12]
60	Jean Sylvestre	[27]
61	E. Talla	[12]
62	Denis Thieffry	[25]
63	Morgane Thomas-Chollier	[17] [21] [25]
64	Ariane Toussaint	[18]
65	Jean-Valéry Turatsinze	[17]
66	Gilles Vanderstocken	[16]
67	Eric Vervisch	[17]
68	Lorenz Wernisch	[2] [3]
69	Shoshana J. Wodak	[2] [3] [5] [7] [8] [10] [11] [12]

Colors in the list of coauthors

Last update Fri Jun 1 15:44:53 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page