Jotun Hein

	2010
39		Márton Münz, Rune B. Lyngsø, Jotun Hein, Philip C. Biggin: Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity. BMC Bioinformatics 11: 188 (2010)
38		Adrienn Szabo, Ádám Novák, István Miklós, Jotun Hein: Reticular Alignment: A progressive corner-cutting method for multiple sequence alignment. BMC Bioinformatics 11: 570 (2010)
37		Rahul Satija, Jotun Hein, Gerton Lunter: Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques. Bioinformatics 26(17): 2116-2120 (2010)
36		Eszter Friedman, István Miklós, Jotun Hein: MCMC Network: Graphical Interface for Bayesian Analysis of Metabolic Networks. ERCIM News 2010(82): 31-32 (2010)
35		Aziz Mithani, Gail M. Preston, Jotun Hein: A Bayesian Approach to the Evolution of Metabolic Networks on a Phylogeny. PLoS Computational Biology 6(8): (2010)
	2009
34		Aziz Mithani, Gail M. Preston, Jotun Hein: A stochastic model for the evolution of metabolic networks with neighbor dependence. Bioinformatics 25(12): 1528-1535 (2009)
33		Aziz Mithani, Gail M. Preston, Jotun Hein: Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison. Bioinformatics 25(14): 1831-1832 (2009)
	2008
32		Rune B. Lyngsø, Yun S. Song, Jotun Hein: Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony. RECOMB 2008: 463-477
31		István Miklós, Ádám Novák, Balázs Dombai, Jotun Hein: How reliably can we predict the reliability of protein structure predictions? BMC Bioinformatics 9: (2008)
30		Saskia de Groot, Thomas Mailund, Gerton Lunter, Jotun Hein: Investigating selection on viruses: a statistical alignment approach. BMC Bioinformatics 9: (2008)
29		Rahul Satija, Lior Pachter, Jotun Hein: Combining statistical alignment and phylogenetic footprinting to detect regulatory elements. Bioinformatics 24(10): 1236-1242 (2008)
28		Ádám Novák, István Miklós, Rune B. Lyngsø, Jotun Hein: StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees. Bioinformatics 24(20): 2403-2404 (2008)
	2007
27		Stephen McCauley, Saskia de Groot, Thomas Mailund, Jotun Hein: Annotation of selection strengths in viral genomes. Bioinformatics 23(22): 2978-2986 (2007)
26		Saskia de Groot, Thomas Mailund, Jotun Hein: Comparative annotation of viral genomes with non-conserved gene structure. Bioinformatics 23(9): 1080-1089 (2007)
	2006
25		Paul Jenkins, Rune B. Lyngsø, Jotun Hein: How Many Transcripts Does It Take to Reconstruct the Splice Graph? WABI 2006: 103-114
24		Stephen McCauley, Jotun Hein: Using hidden Markov models and observed evolution to annotate viral genomes. Bioinformatics 22(11): 1308-1316 (2006)
23		Thomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Jesper N. Madsen, Jotun Hein, Leif Schauser: GeneRecon - a coalescent based tool for fine-scale association mapping. Bioinformatics 22(18): 2317-2318 (2006)
22		Yun S. Song, Rune B. Lyngsø, Jotun Hein: Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics. IEEE/ACM Trans. Comput. Biology Bioinform. 3(3): 239-251 (2006)
21		Gerton Lunter, Chris P. Ponting, Jotun Hein: Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model. PLoS Computational Biology 2(1): (2006)
	2005
20		Rune B. Lyngsø, Yun S. Song, Jotun Hein: Minimum Recombination Histories by Branch and Bound. WABI 2005: 239-250
19		Gerton Lunter, István Miklós, Alexei Drummond, Jens Ledet Jensen, Jotun Hein: Bayesian coestimation of phylogeny and sequence alignment. BMC Bioinformatics 6: 83 (2005)
18		István Miklós, Péter Ittzés, Jotun Hein: ParIS Genome Rearrangement server. Bioinformatics 21(6): 817-820 (2005)
17		Yun S. Song, Jotun Hein: Constructing Minimal Ancestral Recombination Graphs. Journal of Computational Biology 12(2): 147-169 (2005)
	2004
16		Jotun Hein, Mikkel H. Schierup, Carsten Wiuf: Gene Genealogies, Variation and Evolution - A Primer in Coalescent Theory. Wiley 2004: I-XIII, 1-276
15		István Miklós, Jotun Hein: Genome Rearrangement in Mitochondria and Its Computational Biology. Comparative Genomics 2004: 85-96
14		Gerton Lunter, Jotun Hein: A nucleotide substitution model with nearest-neighbour interactions. ISMB/ECCB (Supplement of Bioinformatics) 2004: 216-223
	2003
13		Gerton Lunter, István Miklós, Alexei Drummond, Jens Ledet Jensen, Jotun Hein: Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model. WABI 2003: 228-244
12		Yun S. Song, Jotun Hein: Parsimonious Reconstruction of Sequence Evolution and Haplotype Blocks. WABI 2003: 287-302
11		Jakob Fredslund, Jotun Hein, Tejs Scharling: A Large Version of the Small Parsimony Problem. WABI 2003: 417-432
10		Jakob Skou Pedersen, Jotun Hein: Gene finding with a hidden Markov model of genome structure and evolution. Bioinformatics 19(2): 219-227 (2003)
9		Gerton Lunter, István Miklós, Yun S. Song, Jotun Hein: An Efficient Algorithm for Statistical Multiple Alignment on Arbitrary Phylogenetic Trees. Journal of Computational Biology 10(6): 869-889 (2003)
8		Bjarne Knudsen, Jotun Hein: Pfold: RNA secondary structure prediction using stochastic context-free grammars. Nucleic Acids Research 31(13): 3423-3428 (2003)
	2001
7		Jotun Hein: An Algorithm for Statistical Alignment of Sequences Related by a Binary Tree. Pacific Symposium on Biocomputing 2001: 179-190
6		Mike A. Steel, Jotun Hein: Applying the Thorne-Kishino-Felsenstein model to sequence evolution on a star-shaped tree. Appl. Math. Lett. 14(6): 679-684 (2001)
	1999
5		Bjarne Knudsen, Jotun Hein: RNA secondary structure prediction using stochastic context-free grammars and evolutionary history. Bioinformatics 15(6): 446-454 (1999)
	1998
4		Christian N. S. Pedersen, Rune B. Lyngsø, Jotun Hein: Comparison of Coding DNA. CPM 1998: 153-173
	1997
3		Alberto Apostolico, Jotun Hein: Combinatorial Pattern Matching, 8th Annual Symposium, CPM 97, Aarhus, Denmark, June 30 - July 2, 1997, Proceedings Springer 1997
	1996
2		Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang: On the Complexity of Comparing Evolutionary Trees. Discrete Applied Mathematics 71(1-3): 153-169 (1996)
	1995
1		Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang: On the Complexity of Comparing Evolutionary Trees (Extended Abstract). CPM 1995: 177-190

Coauthor Index

1	Alberto Apostolico	[3]
2	Philip C. Biggin	[39]
3	Balázs Dombai	[31]
4	Alexei Drummond	[13] [19]
5	Jakob Fredslund	[11]
6	Eszter Friedman	[36]
7	Saskia de Groot	[26] [27] [30]
8	Péter Ittzés	[18]
9	Paul Jenkins	[25]
10	Jens Ledet Jensen	[13] [19]
11	Tao Jiang	[1] [2]
12	Bjarne Knudsen	[5] [8]
13	Gerton Lunter	[9] [13] [14] [19] [21] [30] [37]
14	Rune B. Lyngsø	[4] [20] [22] [25] [28] [32] [39]
15	Jesper N. Madsen	[23]
16	Thomas Mailund	[23] [26] [27] [30]
17	Stephen McCauley	[24] [27]
18	István Miklós	[9] [13] [15] [18] [19] [28] [31] [36] [38]
19	Aziz Mithani	[33] [34] [35]
20	Márton Münz	[39]
21	Ádám Novák	[28] [31] [38]
22	Lior Pachter	[29]
23	Christian N. S. Pedersen	[4] [23]
24	Jakob Skou Pedersen	[10]
25	Chris P. Ponting	[21]
26	Gail M. Preston	[33] [34] [35]
27	Rahul Satija	[29] [37]
28	Tejs Scharling	[11]
29	Leif Schauser	[23]
30	Mikkel H. Schierup (Mikkel Heide Schierup)	[16] [23]
31	Yun S. Song	[9] [12] [17] [20] [22] [32]
32	Mike A. Steel (Michael Anthony Steel)	[6]
33	Adrienn Szabo	[38]
34	Lusheng Wang	[1] [2]
35	Carsten Wiuf	[16]
36	Kaizhong Zhang	[1] [2]

Colors in the list of coauthors

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