Simin He

	2010
23		Chen Zhou, Hao Chi, Leheng Wang, You Li, Yan-Jie Wu, Yan Fu, Ruixiang Sun, Simin He: Speeding up tandem mass spectrometry-based database searching by longest common prefix. BMC Bioinformatics 11: 577 (2010)
22		Ding Ye, Yan Fu, Ruixiang Sun, Haipeng Wang, Zuofei Yuan, Hao Chi, Simin He: Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate. Bioinformatics [ISMB] 26(12): 399-406 (2010)
	2009
21		Yan Fu, Wei Jia, Zhuang Lu, Haipeng Wang, Zuofei Yuan, Hao Chi, You Li, Liyun Xiu, Wenping Wang, Chao Liu, Leheng Wang, Ruixiang Sun, Wen Gao, Xiaohong Qian, Simin He: Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences. BMC Bioinformatics 10(S-1): (2009)
	2008
20		Xiang Chen, Simin He, Dongbo Bu, Fa Zhang, Zhiyong Wang, Runsheng Chen, Wen Gao: FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space. Bioinformatics 24(18): 1994-2001 (2008)
19		Simin He, Shutao Sun, Hong-Tao Guan, Qiang Zheng, Youjian Zhao, Wen Gao: On guaranteed smooth switching for buffered crossbar switches. IEEE/ACM Trans. Netw. 16(3): 718-731 (2008)
	2007
18		Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, Wen Gao: A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots. BIBE 2007: 411-417
17		Yi Wang, Simin He, Youjian Zhao, Qiang Zheng, Wen Gao: Practical Algorithms of Bandwidth Regulation for Rate-Based Switching. GLOBECOM 2007: 2483-2487
16		Yan Fu, Wen Gao, Simin He, Ruixiang Sun, Hu Zhou, Rong Zeng: Mining Tandem Mass Spectral Data to Develop a More Accurate Mass Error Model for Peptide Identification. Pacific Symposium on Biocomputing 2007: 421-432
	2006
15		Haipeng Wang, Yan Fu, Ruixiang Sun, Simin He, Rong Zeng, Wen Gao: An SVM Scorer for More Sensitive and Reliable Peptide Identification via Tandem Mass Spectrometry. Pacific Symposium on Biocomputing 2006: 303-314
14		Dequan Li, Wen Gao, Charles X. Ling, Xiaobiao Wang, Ruixiang Sun, Simin He: IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics. Bioinformatics 22(20): 2572-2573 (2006)
13		Shutao Sun, Simin He, Wen Gao: Throughput analysis of a buffered crossbar switch with multiple input queues under burst traffic. IEEE Communications Letters 10(4): 305-307 (2006)
	2005
12		Yanfeng Zheng, Simin He, Shutao Sun, Wen Gao: Scheduling Algorithms for Input Queued Switches Using Local Search Technique. ICN (1) 2005: 865-872
11		Yanfeng Zheng, Simin He, Shutao Sun, Wen Gao: Parallelized scheduling algorithm for input queued switches using local search technique. IPCCC 2005: 43-48
10		Simin He, Shutao Sun, Wei Zhao, Yanfeng Zheng, Wen Gao: Smooth switching problem in buffered crossbar switches. SIGMETRICS 2005: 386-387
9		Dequan Li, Yan Fu, Ruixiang Sun, Charles X. Ling, Yonggang Wei, Hu Zhou, Rong Zeng, Qiang Yang, Simin He, Wen Gao: pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry. Bioinformatics 21(13): 3049-3050 (2005)
8		Jingfen Zhang, Wen Gao, Jinjin Cai, Simin He, Rong Zeng, Runsheng Chen: Predicting Molecular Formulas of Fragment Ions with Isotope Patterns in Tandem Mass Spectra. IEEE/ACM Trans. Comput. Biology Bioinform. 2(3): 217-230 (2005)
7		Kui Gao, Wen Gao, Simin He, Yuan Zhang: Real-time smoothing for network adaptive video streaming. J. Visual Communication and Image Representation 16(4-5): 512-526 (2005)
	2004
6		Yan Fu, Qiang Yang, Charles X. Ling, Haipeng Wang, Dequan Li, Ruixiang Sun, Hu Zhou, Rong Zeng, Yiqiang Chen, Simin He, Wen Gao: A Kernel-Based Case Retrieval Algorithm with Application to Bioinformatics. PRICAI 2004: 544-553
5		Kui Gao, Wen Gao, Simin He, Yuan Zhang: Real-time scheduling based on imprecise computation for scalable streaming media system over the Internet. Real-Time Imaging 10(5): 307-313 (2004)
4		Yan Fu, Ruixiang Sun, Qiang Yang, Simin He, Chunli Wang, Haipeng Wang, Shiguang Shan, Junfa Liu, Wen Gao: A block-based support vector machine approach to the protein homology prediction task in KDD Cup 2004. SIGKDD Explorations 6(2): 120-124 (2004)
	2003
3		Kui Gao, Wen Gao, Simin He, Peng Gao, Yuan Zhang: Real-time scheduling on scalable media stream delivery. ISCAS (2) 2003: 824-827
2		Kui Gao, Wen Gao, Simin He, Yuan Zhang: Real-time scheduling and online resource allocation on scalable streaming media server. VCIP 2003: 544-551
	1999
1		Simin He, Bo Zhang: Solving SAT by algorithm transform of Wu's method. J. Comput. Sci. Technol. 14(5): 468-480 (1999)

Coauthor Index

1	Dongbo Bu	[18] [20]
2	Jinjin Cai	[8]
3	Runsheng Chen	[8] [18] [20]
4	Xiang Chen	[18] [20]
5	Yiqiang Chen	[6]
6	Hao Chi	[21] [22] [23]
7	Yan Fu	[4] [6] [9] [15] [16] [21] [22] [23]
8	Kui Gao	[2] [3] [5] [7]
9	Peng Gao	[3]
10	Wen Gao	[2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21]
11	Hong-Tao Guan	[19]
12	Wei Jia	[21]
13	Dequan Li	[6] [9] [14]
14	You Li	[21] [23]
15	Charles X. Ling	[6] [9] [14]
16	Chao Liu	[21]
17	Junfa Liu	[4]
18	Zhuang Lu	[21]
19	Xiaohong Qian	[21]
20	Shiguang Shan (Robert Shan)	[4]
21	Ruixiang Sun	[4] [6] [9] [14] [15] [16] [21] [22] [23]
22	Shutao Sun	[10] [11] [12] [13] [19]
23	Chunli Wang	[4]
24	Haipeng Wang	[4] [6] [15] [21] [22]
25	Leheng Wang	[21] [23]
26	Wenping Wang	[21]
27	Xiaobiao Wang	[14]
28	Yi Wang	[17]
29	Zhiyong Wang	[20]
30	Yonggang Wei	[9]
31	Yan-Jie Wu	[23]
32	Liyun Xiu	[21]
33	Qiang Yang	[4] [6] [9]
34	Ding Ye	[22]
35	Zuofei Yuan	[21] [22]
36	Rong Zeng	[6] [8] [9] [15] [16]
37	Bo Zhang	[1]
38	Fa Zhang	[20]
39	Jingfen Zhang	[8]
40	Yuan Zhang	[2] [3] [5] [7]
41	Wei Zhao	[10]
42	Youjian Zhao	[17] [19]
43	Qiang Zheng	[17] [19]
44	Yanfeng Zheng	[10] [11] [12]
45	Chen Zhou	[23]
46	Hu Zhou	[6] [9] [16]

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