Michiaki Hamada

	2011
15		Michiaki Hamada, Edward Wijaya, Martin C. Frith, Kiyoshi Asai: Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection. Bioinformatics 27(22): 3085-3092 (2011)
14		Kengo Sato, Yuki Kato, Michiaki Hamada, Tatsuya Akutsu, Kiyoshi Asai: IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming. Bioinformatics [ISMB/ECCB] 27(13): 85-93 (2011)
13		Michiaki Hamada, Kengo Sato, Kiyoshi Asai: Improving the accuracy of predicting secondary structure for aligned RNA sequences. Nucleic Acids Research 39(2): 393-402 (2011)
12		Michiaki Hamada, Koichiro Yamada, Kengo Sato, Martin C. Frith, Kiyoshi Asai: CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences. Nucleic Acids Research 39(Web-Server-Issue): 100-106 (2011)
	2010
11		Michiaki Hamada, Kengo Sato, Kiyoshi Asai: Prediction of RNA secondary structure by maximizing pseudo-expected accuracy. BMC Bioinformatics 11: 586 (2010)
10		Martin C. Frith, Michiaki Hamada, Paul Horton: Parameters for accurate genome alignment. BMC Bioinformatics 11: 80 (2010)
9		Yuki Kato, Kengo Sato, Michiaki Hamada, Yoshihide Watanabe, Kiyoshi Asai, Tatsuya Akutsu: RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming. Bioinformatics 26(18): (2010)
8		Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara: A Non-Parametric Bayesian Approach for Predicting RNA Secondary Structures. J. Bioinformatics and Computational Biology 8(4): 727-742 (2010)
	2009
7		Kengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara: A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures. WABI 2009: 286-297
6		Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai: Predictions of RNA secondary structure by combining homologous sequence information. Bioinformatics 25(12): (2009)
5		Michiaki Hamada, Kengo Sato, Hisanori Kiryu, Toutai Mituyama, Kiyoshi Asai: CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score. Bioinformatics 25(24): 3236-3243 (2009)
4		Michiaki Hamada, Hisanori Kiryu, Kengo Sato, Toutai Mituyama, Kiyoshi Asai: Prediction of RNA secondary structure using generalized centroid estimators. Bioinformatics 25(4): 465-473 (2009)
3		Kengo Sato, Michiaki Hamada, Kiyoshi Asai, Toutai Mituyama: CENTROIDFOLD: a web server for RNA secondary structure prediction. Nucleic Acids Research 37(Web-Server-Issue): 277-280 (2009)
	2008
2		Kiyoshi Asai, Hisanori Kiryu, Michiaki Hamada, Yasuo Tabei, Kengo Sato, Hiroshi Matsui, Yasubumi Sakakibara, Goro Terai, Toutai Mituyama: Software.ncrna.org: web servers for analyses of RNA sequences. Nucleic Acids Research 36(Web-Server-Issue): 75-78 (2008)
	2006
1		Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, Kiyoshi Asai: Mining frequent stem patterns from unaligned RNA sequences. Bioinformatics 22(20): 2480-2487 (2006)

Coauthor Index

1	Tatsuya Akutsu	[9] [14]
2	Kiyoshi Asai	[1] [2] [3] [4] [5] [6] [7] [8] [9] [11] [12] [13] [14] [15]
3	Martin C. Frith	[10] [12] [15]
4	Paul Horton	[10]
5	Yuki Kato	[9] [14]
6	Taishin Kin	[1]
7	Hisanori Kiryu	[2] [4] [5] [6]
8	Taku Kudo	[1]
9	Hiroshi Matsui	[2]
10	Toutai Mituyama	[2] [3] [4] [5] [6] [7] [8]
11	Yasubumi Sakakibara	[2] [7] [8]
12	Kengo Sato	[2] [3] [4] [5] [6] [7] [8] [9] [11] [12] [13] [14]
13	Yasuo Tabei	[2]
14	Goro Terai	[2]
15	Koji Tsuda	[1]
16	Yoshihide Watanabe	[9]
17	Edward Wijaya	[15]
18	Koichiro Yamada	[12]

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