Jörg Hakenberg

	2012
23		Luis Tari, Phan Huy Tu, Jörg Hakenberg, Yi Chen, Tran Cao Son, Graciela Gonzalez, Chitta Baral: Incremental Information Extraction Using Relational Databases. IEEE Trans. Knowl. Data Eng. 24(1): 86-99 (2012)
	2011
22		Jörg Hakenberg, Martin Gerner, Maximilian Haeussler, Illés Solt, Conrad Plake, Michael Schroeder, Graciela Gonzalez, Goran Nenadic, Casey M. Bergman: The GNAT library for local and remote gene mention normalization. Bioinformatics 27(19): 2769-2771 (2011)
21		Jörg Hakenberg, Illés Solt, Domonkos Tikk, Nguyen Ha Vo, Luis Tari, Quang Long Nguyen, Chitta Baral, Ulf Leser: Molecular Event Extraction from Link Grammar Parse Trees in the BioNLP'09 Shared Task. Computational Intelligence 27(4): 665-680 (2011)
	2010
20		Syed Toufeeq Ahmed, Radhika Nair, Chintan Patel, Sheela P. Kanwar, Jörg Hakenberg, Hasan Davulcu: Semantic classification and dependency parsing enabled automated bio-molecular event extraction from text. BCB 2010: 370-373
19		Luis Tari, Phan Huy Tu, Jörg Hakenberg, Yi Chen, Tran Cao Son, Graciela Gonzalez, Chitta Baral: GenerIE: Information extraction using database queries. ICDE 2010: 1121-1124
18		Luis Tari, Saadat Anwar, Shanshan Liang, Jörg Hakenberg, Chitta Baral: Synthesis of Pharmacokinetic Pathways through Knowledge Acquisition and Automated Reasoning. Pacific Symposium on Biocomputing 2010: 465-476
17		Siddhartha Jonnalagadda, Luis Tari, Jörg Hakenberg, Chitta Baral, Graciela Gonzalez: Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text CoRR abs/1001.4277: (2010)
16		Jörg Hakenberg, Robert Leaman, Nguyen Ha Vo, Siddhartha Jonnalagadda, Ryan Sullivan, Christopher Miller, Luis Tari, Chitta Baral, Graciela Gonzalez: Efficient Extraction of Protein-Protein Interactions from Full-Text Articles. IEEE/ACM Trans. Comput. Biology Bioinform. 7(3): 481-494 (2010)
15		Domonkos Tikk, Philippe Thomas, Peter Palaga, Jörg Hakenberg, Ulf Leser: A Comprehensive Benchmark of Kernel Methods to Extract Protein-Protein Interactions from Literature. PLoS Computational Biology 6(7): (2010)
	2009
14		Peter Palaga, Long Nguyen, Ulf Leser, Jörg Hakenberg: High-performance information extraction with AliBaba. EDBT 2009: 1140-1143
13		Siddhartha Jonnalagadda, Luis Tari, Jörg Hakenberg, Chitta Baral, Graciela Gonzalez: Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text. HLT-NAACL (Short Papers) 2009: 177-180
12		Luis Tari, Jörg Hakenberg, Graciela Gonzalez, Chitta Baral: Querying Parse Tree Database of Medline Text to Synthesize User-Specific Biomolecular Networks. Pacific Symposium on Biocomputing 2009: 87-98
11		Dimitra Alexopoulou, Bill Andreopoulos, Heiko Dietze, Andreas Doms, Fabien L. Gandon, Jörg Hakenberg, Khaled Khelif, Michael Schroeder, Thomas Wächter: Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy. BMC Bioinformatics 10: (2009)
10		Conrad Plake, Loïc Royer, Rainer Winnenburg, Jörg Hakenberg, Michael Schroeder: GoGene: gene annotation in the fast lane. Nucleic Acids Research 37(Web-Server-Issue): 300-304 (2009)
9		Jörg Hakenberg: Mining relations from the biomedical literature. Humboldt University of Berlin 2009
	2008
8		Jörg Hakenberg, Conrad Plake, Robert Leaman, Michael Schroeder, Graciela Gonzalez: Inter-species normalization of gene mentions with GNAT. ECCB 2008: 126-132
7		Heiko Dietze, Dimitra Alexopoulou, Michael R. Alvers, Bill Barrio-Alvers, Andreas Doms, Jörg Hakenberg, Jan Mönnich, Conrad Plake, Andreas Reischuk, Loïc Royer, Thomas Wächter, Matthias Zschunke, Michael Schroeder: GoPubMed: Exploring Pubmed with Ontological Background Knowledge. Ontologies and Text Mining for Life Sciences 2008
6		Jörg Hakenberg: Services for annotation of biomedical text. Ontologies and Text Mining for Life Sciences 2008
	2006
5		Eric G. Bremer, Jörg Hakenberg, Eui-Hong Han, Daniel P. Berrar, Werner Dubitzky: Knowledge Discovery in Life Science Literature, PAKDD 2006 International Workshop, KDLL 2006, Singapore, April 9, 2006, Proceedings Springer 2006
4		Conrad Plake, Torsten Schiemann, Marcus Pankalla, Jörg Hakenberg, Ulf Leser: ALIBABA: PubMed as a graph. Bioinformatics 22(19): 2444-2445 (2006)
	2005
3		Conrad Plake, Jörg Hakenberg, Ulf Leser: Optimizing syntax patterns for discovering protein-protein interactions. SAC 2005: 195-201
2		Jörg Hakenberg, Steffen Bickel, Conrad Plake, Ulf Brefeld, Hagen Zahn, Lukas Faulstich, Ulf Leser, Tobias Scheffer: Systematic feature evaluation for gene name recognition. BMC Bioinformatics 6(S-1): (2005)
1		Ulf Leser, Jörg Hakenberg: What makes a gene name? Named entity recognition in the biomedical literature. Briefings in Bioinformatics 6(4): 357-369 (2005)

Coauthor Index

1	Syed Toufeeq Ahmed	[20]
2	Dimitra Alexopoulou	[7] [11]
3	Michael R. Alvers	[7]
4	Bill Andreopoulos	[11]
5	Saadat Anwar	[18]
6	Chitta Baral	[12] [13] [16] [17] [18] [19] [21] [23]
7	Bill Barrio-Alvers	[7]
8	Casey M. Bergman	[22]
9	Daniel P. Berrar	[5]
10	Steffen Bickel	[2]
11	Ulf Brefeld	[2]
12	Eric G. Bremer	[5]
13	Yi Chen	[19] [23]
14	Hasan Davulcu	[20]
15	Heiko Dietze	[7] [11]
16	Andreas Doms	[7] [11]
17	Werner Dubitzky	[5]
18	Lukas Faulstich	[2]
19	Fabien L. Gandon (Fabien Gandon)	[11]
20	Martin Gerner	[22]
21	Graciela Gonzalez	[8] [12] [13] [16] [17] [19] [22] [23]
22	Maximilian Haeussler	[22]
23	Eui-Hong Han	[5]
24	Siddhartha Jonnalagadda	[13] [16] [17]
25	Sheela P. Kanwar	[20]
26	Khaled Khelif	[11]
27	Robert Leaman	[8] [16]
28	Ulf Leser	[1] [2] [3] [4] [14] [15] [21]
29	Shanshan Liang	[18]
30	Christopher Miller	[16]
31	Jan Mönnich	[7]
32	Radhika Nair	[20]
33	Goran Nenadic	[22]
34	Long Nguyen	[14]
35	Quang Long Nguyen	[21]
36	Peter Palaga	[14] [15]
37	Marcus Pankalla	[4]
38	Chintan Patel	[20]
39	Conrad Plake	[2] [3] [4] [7] [8] [10] [22]
40	Andreas Reischuk	[7]
41	Loïc Royer	[7] [10]
42	Tobias Scheffer	[2]
43	Torsten Schiemann	[4]
44	Michael Schroeder	[7] [8] [10] [11] [22]
45	Illés Solt	[21] [22]
46	Tran Cao Son	[19] [23]
47	Ryan Sullivan	[16]
48	Luis Tari	[12] [13] [16] [17] [18] [19] [21] [23]
49	Philippe Thomas	[15]
50	Domonkos Tikk	[15] [21]
51	Phan Huy Tu	[19] [23]
52	Nguyen Ha Vo	[16] [21]
53	Thomas Wächter	[7] [11]
54	Rainer Winnenburg	[10]
55	Hagen Zahn	[2]
56	Matthias Zschunke	[7]

Last update Fri Jun 1 15:44:53 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page