Nick V. Grishin

	2011
32		Qian Cong, Lisa N. Kinch, Jimin Pei, Shuoyong Shi, Vyacheslav N. Grishin, Wenlin Li, Nick V. Grishin: An automatic method for CASP9 free modeling structure prediction assessment. Bioinformatics 27(24): 3371-3378 (2011)
31		Shide Liang, Yaoqi Zhou, Nick V. Grishin, Daron M. Standley: Protein side chain modeling with orientation-dependent atomic force fields derived by series expansions. Journal of Computational Chemistry 32(8): 1680-1686 (2011)
	2010
30		Qian Cong, Bong-Hyun Kim, Lisa N. Kinch, Nick V. Grishin: Structural Differences between Proteins with Similar Sequences. BIBE 2010: 250-256
29		Bong-Hyun Kim, Qian Cong, Nick V. Grishin: HangOut: generating clean PSI-BLAST profiles for domains with long insertions. Bioinformatics 26(12): 1564-1565 (2010)
	2009
28		Ruslan Sadreyev, Yong Wang, Nick V. Grishin: Considering scores between unrelated proteins in the search database improves profile comparison. BMC Bioinformatics 10: 399 (2009)
27		Ruslan Sadreyev, Shuoyong Shi, David Baker, Nick V. Grishin: Structure similarity measure with penalty for close non-equivalent residues. Bioinformatics 25(10): 1259-1263 (2009)
26		Yong Wang, Ruslan Sadreyev, Nick V. Grishin: PROCAIN server for remote protein sequence similarity search. Bioinformatics 25(16): 2076-2077 (2009)
25		Ruslan Sadreyev, Jamison D. Feramisco, Hensin Tsao, Nick V. Grishin: Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways. Bioinformatics 25(22): 2891-2896 (2009)
24		Shuoyong Shi, Bhadrachalam Chitturi, Nick V. Grishin: ProSMoS server: a pattern-based search using interaction matrix representation of protein structures. Nucleic Acids Research 37(Web-Server-Issue): 526-531 (2009)
23		Bong-Hyun Kim, Hua Cheng, Nick V. Grishin: HorA web server to infer homology between proteins using sequence and structural similarity. Nucleic Acids Research 37(Web-Server-Issue): 532-538 (2009)
22		Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V. Grishin: COMPASS server for homology detection: improved statistical accuracy, speed and functionality. Nucleic Acids Research 37(Web-Server-Issue): 90-94 (2009)
	2008
21		James O. Wrabl, Nick V. Grishin: Statistics of Random Protein Superpositions: p-Values for Pairwise Structure Alignment. Journal of Computational Biology 15(3): 317-355 (2008)
20		Hua Cheng, Bong-Hyun Kim, Nick V. Grishin: MALISAM: a database of structurally analogous motifs in proteins. Nucleic Acids Research 36(Database-Issue): 211-217 (2008)
19		Jimin Pei, Ming Tang, Nick V. Grishin: PROMALS3D web server for accurate multiple protein sequence and structure alignments. Nucleic Acids Research 36(Web-Server-Issue): 30-34 (2008)
	2007
18		Yuan Qi, Ruslan Sadreyev, Yong Wang, Bong-Hyun Kim, Nick V. Grishin: A comprehensive system for evaluation of remote sequence similarity detection. BMC Bioinformatics 8: (2007)
17		Shuoyong Shi, Yi Zhong, Indraneel Majumdar, S. Sri Krishna, Nick V. Grishin: Searching for three-dimensional secondary structural patterns in proteins with ProSMoS. Bioinformatics 23(11): 1331-1338 (2007)
16		Jimin Pei, Nick V. Grishin: PROMALS: towards accurate multiple sequence alignments of distantly related proteins. Bioinformatics 23(7): 802-808 (2007)
15		Jimin Pei, Bong-Hyun Kim, Ming Tang, Nick V. Grishin: PROMALS web server for accurate multiple protein sequence alignments. Nucleic Acids Research 35(Web-Server-Issue): 649-652 (2007)
14		Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V. Grishin: COMPASS server for remote homology inference. Nucleic Acids Research 35(Web-Server-Issue): 653-658 (2007)
	2006
13		Jimin Pei, Wei Cai, Lisa N. Kinch, Nick V. Grishin: Prediction of functional specificity determinants from protein sequences using log-likelihood ratios. Bioinformatics 22(2): 164-171 (2006)
12		Kira S. Makarova, Nick V. Grishin, Eugene V. Koonin: The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria. Bioinformatics 22(21): 2581-2584 (2006)
	2005
11		Indraneel Majumdar, S. Sri Krishna, Nick V. Grishin: PALSSE: A program to delineate linear secondary structural elements from protein structures. BMC Bioinformatics 6: 202 (2005)
10		S. Sri Krishna, Nick V. Grishin: Structural drift: a possible path to protein fold change. Bioinformatics 21(8): 1308-1310 (2005)
	2004
9		Ruslan Sadreyev, Nick V. Grishin: Estimates of statistical significance for comparison of individual positions in multiple sequence alignments. BMC Bioinformatics 5: 106 (2004)
8		Sara Cheek, Yuan Qi, S. Sri Krishna, Lisa N. Kinch, Nick V. Grishin: SCOPmap: Automated assignment of protein structures to evolutionary superfamilies. BMC Bioinformatics 5: 197 (2004)
7		Yuan Qi, Nick V. Grishin: PCOAT: positional correlation analysis using multiple methods. Bioinformatics 20(18): 3697-3699 (2004)
6		Ruslan Sadreyev, Nick V. Grishin: Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs. Bioinformatics 20(6): 818-828 (2004)
5		Krzysztof Ginalski, Marcin von Grotthuss, Nick V. Grishin, Leszek Rychlewski: Detecting distant homology with Meta-BASIC. Nucleic Acids Research 32(Web-Server-Issue): 576-581 (2004)
	2003
4		David Mittelman, Ruslan Sadreyev, Nick V. Grishin: Probabilistic scoring measures for profile-profile comparison yield more accurate short seed alignments. Bioinformatics 19(12): 1531-1539 (2003)
3		Jimin Pei, Ruslan Sadreyev, Nick V. Grishin: PCMA: fast and accurate multiple sequence alignment based on profile consistency. Bioinformatics 19(3): 427-428 (2003)
	2002
2		Vyacheslav N. Grishin, Nick V. Grishin: Euclidian space and grouping of biological objects. Bioinformatics 18(11): 1523-1534 (2002)
	2001
1		Jimin Pei, Nick V. Grishin: AL2CO: calculation of positional conservation in a protein sequence alignment. Bioinformatics 17(8): 700-712 (2001)

Coauthor Index

1	David Baker	[27]
2	Wei Cai	[13]
3	Sara Cheek	[8]
4	Hua Cheng	[20] [23]
5	Bhadrachalam Chitturi	[24]
6	Qian Cong	[29] [30] [32]
7	Jamison D. Feramisco	[25]
8	Krzysztof Ginalski	[5]
9	Vyacheslav N. Grishin	[2] [32]
10	Marcin von Grotthuss	[5]
11	Bong-Hyun Kim	[14] [15] [18] [20] [22] [23] [29] [30]
12	Lisa N. Kinch	[8] [13] [30] [32]
13	Eugene V. Koonin	[12]
14	S. Sri Krishna	[8] [10] [11] [17]
15	Wenlin Li	[32]
16	Shide Liang	[31]
17	Indraneel Majumdar	[11] [17]
18	Kira S. Makarova	[12]
19	David Mittelman	[4]
20	Jimin Pei	[1] [3] [13] [15] [16] [19] [32]
21	Yuan Qi	[7] [8] [18]
22	Leszek Rychlewski	[5]
23	Ruslan Sadreyev	[3] [4] [6] [9] [14] [18] [22] [25] [26] [27] [28]
24	Shuoyong Shi	[17] [24] [27] [32]
25	Daron M. Standley	[31]
26	Ming Tang	[14] [15] [19] [22]
27	Hensin Tsao	[25]
28	Yong Wang	[18] [26] [28]
29	James O. Wrabl	[21]
30	Yi Zhong	[17]
31	Yaoqi Zhou	[31]

Colors in the list of coauthors

Last update Thu May 31 18:55:10 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page