Jan Gorodkin

	2012
30		David Langenberger, Sachin Pundhir, Claus Thorn Ekstrøm, Peter F. Stadler, Steve Hoffmann, Jan Gorodkin: deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns. Bioinformatics 28(1): 17-24 (2012)
	2011
29		Stefan E. Seemann, Andreas S. Richter, Tanja Gesell, Rolf Backofen, Jan Gorodkin: PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences. Bioinformatics 27(2): 211-219 (2011)
28		Peter Menzel, Peter F. Stadler, Jan Gorodkin: maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences. Bioinformatics 27(3): 317-325 (2011)
27		Stefan E. Seemann, Peter Menzel, Rolf Backofen, Jan Gorodkin: The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple RNA sequences. Nucleic Acids Research 39(Web-Server-Issue): 107-111 (2011)
26		Jan Gorodkin, Ivo L. Hofacker: From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs. PLoS Computational Biology 7(8): (2011)
	2009
25		Peter Menzel, Jan Gorodkin, Peter F. Stadler: Maximum Likelihood Estimation of Weight Matrices for Targeted Homology Search. GCB 2009: 211-220
24		Bogumil Kaczkowski, Elfar Torarinsson, Kristin Reiche, Jakob Hull Havgaard, Peter F. Stadler, Jan Gorodkin: Structural profiles of human miRNA families from pairwise clustering. Bioinformatics 25(3): 291-294 (2009)
23		K. Scheibye-Alsing, Steve Hoffmann, A. Frankel, Peter Jensen, Peter F. Stadler, Y. Mang, N. Tommerup, M. J. Gilchrist, A.-B. Nygård, Susanna Cirera, Claus B. Jørgensen, Merete Fredholm, Jan Gorodkin: Sequence assembly. Computational Biology and Chemistry 33(2): 121-136 (2009)
	2007
22		Frank Panitz, Henrik Stengaard, Henrik Hornshøj, Jan Gorodkin, Jakob Hedegaard, Susanna Cirera, Bo Thomsen, Lone B. Madsen, Anette Høj, Rikke K. Vingborg, Bujie Zahn, Xuegang Wang, Xuefei Wang, Rasmus Wernersson, Claus B. Jørgensen, Karsten Scheibye-Knudsen, Troels Arvin, Steen Lumholdt, Milena Sawera, Trine Green, Bente J. Nielsen, Jakob Hull Havgaard, Søren Brunak, Merete Fredholm, Christian Bendixen: SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation. ISMB/ECCB (Supplement of Bioinformatics) 2007: 387-391
21		Elfar Torarinsson, Jakob Hull Havgaard, Jan Gorodkin: Multiple structural alignment and clustering of RNA sequences. Bioinformatics 23(8): 926-932 (2007)
20		Jakob Hull Havgaard, Elfar Torarinsson, Jan Gorodkin: Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix. PLoS Computational Biology 3(10): (2007)
	2006
19		Jan Gorodkin, Jakob Hull Havgaard, Milena Ensterö, Milena Sawera, Peter Jensen, M. Öhman, Merete Fredholm: MicroRNA sequence motifs reveal asymmetry between the stem arms. Computational Biology and Chemistry 30(4): 249-254 (2006)
18		Ebbe Sloth Andersen, Magnus Alm Rosenblad, Niels Larsen, Jesper Cairo Westergaard, Jody Burks, Iwona K. Wower, Jacek Wower, Jan Gorodkin, Tore Samuelsson, Christian Zwieb: The tmRDB and SRPDB resources. Nucleic Acids Research 34(Database-Issue): 163-168 (2006)
	2005
17		Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin: Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. Bioinformatics 21(9): 1815-1824 (2005)
16		Jakob Hull Havgaard, Rune B. Lyngsø, Jan Gorodkin: The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search. Nucleic Acids Research 33(Web-Server-Issue): 650-653 (2005)
	2004
15		Bjarne Knudsen, Ebbe Sloth Andersen, Christian K. Damgaard, Jorgen Kjems, Jan Gorodkin: Evolutionary rate variation and RNA secondary structure prediction. Computational Biology and Chemistry 28(3): 219-226 (2004)
14		Jan Gorodkin: Comparing two K-category assignments by a K-category correlation coefficient. Computational Biology and Chemistry 28(5-6): 367-374 (2004)
	2003
13		Magnus Alm Rosenblad, Jan Gorodkin, Bjarne Knudsen, Christian Zwieb, Tore Samuelsson: SRPDB: Signal Recognition Particle Database. Nucleic Acids Research 31(1): 363-364 (2003)
12		Christian Zwieb, Jan Gorodkin, Bjarne Knudsen, Jody Burks, Jacek Wower: tmRDB (tmRNA database). Nucleic Acids Research 31(1): 446-447 (2003)
	2001
11		Jan Gorodkin, Christian Zwieb, Bjarne Knudsen: Semi-automated update and cleanup of structural RNA alignment databases. Bioinformatics 17(7): 642-645 (2001)
10		Jan Gorodkin, Bodil Søgaard, Hanne Bay, Hans Doll, Per Kølster, Søren Brunak: Recognition of Environmental and Genetic Effects on Barley Phenolic Fingerprints by Neural Networks. Computers & Chemistry 25(3): 301-307 (2001)
9		Jan Gorodkin, Bjarne Knudsen, Christian Zwieb, Tore Samuelsson: SRPDB (Signal Recognition Particle Database). Nucleic Acids Research 29(1): 169-170 (2001)
8		Bjarne Knudsen, Jacek Wower, Christian Zwieb, Jan Gorodkin: tmRDB (tmRNA database). Nucleic Acids Research 29(1): 171-172 (2001)
	1999
7		Jan Gorodkin, Ole Lund, Claus A. F. Andersen, Søren Brunak: Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints. ISMB 1999: 95-105
6		Jan Gorodkin, Hans Henrik Stærfeldt, Ole Lund, Søren Brunak: MatrixPlot: visualizing sequence constraints. Bioinformatics 15(9): 769-770 (1999)
	1997
5		Jan Gorodkin, Laurie J. Heyer, Gary D. Stormo: Finding Common Sequence and Structure Motifs in a Set of RNA Sequences. ISMB 1997: 120-123
4		Jan Gorodkin, Laurie J. Heyer, Søren Brunak, Gary D. Stormo: Displaying the information contents of structural RNA alignments: the structure logos. Computer Applications in the Biosciences 13(6): 583-586 (1997)
3		Jan Gorodkin: Orbits of Boolean Functions. Discrete Applied Mathematics 75(3): 269-275 (1997)
2		Jan Gorodkin, Lars Kai Hansen, Benny Lautrup, Sara A. Solla: Universal Distribution of Saliencies for Pruning in Layered Neural Networks. Int. J. Neural Syst. 8(5-6): 489-498 (1997)
	1993
1		Jan Gorodkin, Lars Kai Hansen, Anders Krogh, Claus Svarer, Ole Winther: A Quantitative Study Of Pruning By Optimal Brain Damage. Int. J. Neural Syst. 4(2): 159-169 (1993)

Coauthor Index

1	Claus A. F. Andersen	[7]
2	Ebbe Sloth Andersen	[15] [18]
3	Troels Arvin	[22]
4	Rolf Backofen	[27] [29]
5	Hanne Bay	[10]
6	Christian Bendixen	[22]
7	Søren Brunak	[4] [6] [7] [10] [22]
8	Jody Burks	[12] [18]
9	Susanna Cirera	[22] [23]
10	Christian K. Damgaard	[15]
11	Hans Doll	[10]
12	Claus Thorn Ekstrøm	[30]
13	Milena Ensterö	[19]
14	A. Frankel	[23]
15	Merete Fredholm	[19] [22] [23]
16	Tanja Gesell	[29]
17	M. J. Gilchrist	[23]
18	Trine Green	[22]
19	Lars Kai Hansen	[1] [2]
20	Jakob Hull Havgaard	[16] [17] [19] [20] [21] [22] [24]
21	Jakob Hedegaard	[22]
22	Laurie J. Heyer	[4] [5]
23	Ivo L. Hofacker	[26]
24	Steve Hoffmann	[23] [30]
25	Anette Høj	[22]
26	Henrik Hornshøj	[22]
27	Peter Jensen	[19] [23]
28	Claus B. Jørgensen	[22] [23]
29	Bogumil Kaczkowski	[24]
30	Jorgen Kjems	[15]
31	Bjarne Knudsen	[8] [9] [11] [12] [13] [15]
32	Per Kølster	[10]
33	Anders Krogh	[1]
34	David Langenberger	[30]
35	Niels Larsen	[18]
36	Benny Lautrup	[2]
37	Steen Lumholdt	[22]
38	Ole Lund	[6] [7]
39	Rune B. Lyngsø	[16] [17]
40	Lone B. Madsen	[22]
41	Y. Mang	[23]
42	Peter Menzel	[25] [27] [28]
43	Bente J. Nielsen	[22]
44	A.-B. Nygård	[23]
45	M. Öhman	[19]
46	Frank Panitz	[22]
47	Sachin Pundhir	[30]
48	Kristin Reiche	[24]
49	Andreas S. Richter	[29]
50	Magnus Alm Rosenblad	[13] [18]
51	Tore Samuelsson	[9] [13] [18]
52	Milena Sawera	[19] [22]
53	K. Scheibye-Alsing	[23]
54	Karsten Scheibye-Knudsen	[22]
55	Stefan E. Seemann	[27] [29]
56	Bodil Søgaard	[10]
57	Sara A. Solla	[2]
58	Peter F. Stadler	[23] [24] [25] [28] [30]
59	Hans Henrik Stærfeldt	[6]
60	Henrik Stengaard	[22]
61	Gary D. Stormo	[4] [5] [17]
62	Claus Svarer	[1]
63	Bo Thomsen	[22]
64	N. Tommerup	[23]
65	Elfar Torarinsson	[20] [21] [24]
66	Rikke K. Vingborg	[22]
67	Xuefei Wang	[22]
68	Xuegang Wang	[22]
69	Rasmus Wernersson	[22]
70	Jesper Cairo Westergaard	[18]
71	Ole Winther	[1]
72	Iwona K. Wower	[18]
73	Jacek Wower	[8] [12] [18]
74	Bujie Zahn	[22]
75	Christian Zwieb	[8] [9] [11] [12] [13] [18]

Colors in the list of coauthors

Last update Thu May 31 18:55:10 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page