 | 2011 |
| 22 |  | Huaiyu Mi,
Anushya Muruganujan,
Emek Demir,
Yukiko Matsuoka,
Akira Funahashi,
Hiroaki Kitano,
Paul D. Thomas:
BioPAX support in CellDesigner.
Bioinformatics 27(24): 3437-3438 (2011) |
| 2010 |
| 21 |  | Yui Ogawa,
Tomonori Ooya,
Yasunori Osana,
Masato Yoshimi,
Yuri Nishikawa,
Akira Funahashi,
Noriko Hiroi,
Hideharu Amano,
Yuichiro Shibata,
Kiyoshi Oguri:
A datapath classification method for FPGA-based scientific application accelerator systems.
FPT 2010: 441-444 |
| 2009 |
| 20 |  | Tomoya Ishimori,
Hideki Yamada,
Yuichiro Shibata,
Yasunori Osana,
Masato Yoshimi,
Yuri Nishikawa,
Hideharu Amano,
Akira Funahashi,
Noriko Hiroi,
Kiyoshi Oguri:
Pipeline Scheduling with Input Port Constraints for an FPGA-Based Biochemical Simulator.
ARC 2009: 368-373 |
| 19 |  | Tomonori Ooya,
Hideki Yamada,
Tomoya Ishimori,
Yuichiro Shibata,
Yasunori Osana,
Kiyoshi Oguri,
Masato Yoshimi,
Yuri Nishikawa,
Akira Funahashi,
Noriko Hiroi,
Hideharu Amano:
Configuring area and performance: Empirical evaluation on an FPGA-based biochemical simulator.
FPL 2009: 679-682 |
| 18 |  | Hideki Yamada,
Yasunori Osana,
Tomoya Ishimori,
Tomonori Ooya,
Masato Yoshimi,
Yuri Nishikawa,
Akira Funahashi,
Noriko Hiroi,
Hideharu Amano,
Yuichiro Shibata,
Kiyoshi Oguri:
A Modular Approach to Heterogeneous Biochemical Model Simulation on an FPGA.
ReConFig 2009: 125-130 |
| 2008 |
| 17 |  | Masato Yoshimi,
Yuri Nishikawa,
Yasunori Osana,
Akira Funahashi,
Yuichiro Shibata,
Hideki Yamada,
Noriko Hiroi,
Hiroaki Kitano,
Hideharu Amano:
Practical implementation of a network-based stochastic biochemical simulation system on an FPGA.
FPL 2008: 663-666 |
| 2007 |
| 16 |  | Masato Yoshimi,
Yow Iwaoka,
Yuri Nishikawa,
Toshinori Kojima,
Yasunori Osana,
Akira Funahashi,
Noriko Hiroi,
Yuichiro Shibata,
Naoki Iwanaga,
Hideki Yamada,
Hiroaki Kitano,
Hideharu Amano:
FPGA Implementation of a Data-Driven Stochastic Biochemical Simulator with the Next Reaction Method.
FPL 2007: 254-259 |
| 15 |  | Hideki Yamada,
Naoki Iwanaga,
Yuichiro Shibata,
Yasunori Osana,
Masato Yoshimi,
Yow Iwaoka,
Yuri Nishikawa,
Toshinori Kojima,
Hideharu Amano,
Akira Funahashi,
Noriko Hiroi,
Hiroaki Kitano,
Kiyoshi Oguri:
A Combining technique of rate law functions for a cost-effective reconfigurable biological simulator.
FPL 2007: 808-811 |
| 2006 |
| 14 |  | Masato Yoshimi,
Yasunori Osana,
Yow Iwaoka,
Yuri Nishikawa,
Toshinori Kojima,
Akira Funahashi,
Noriko Hiroi,
Yuichiro Shibata,
Naoki Iwanaga,
Hiroaki Kitano,
Hideharu Amano:
An FPGA Implementation of High Throughput Stochastic Simulator for Large-Scale Biochemical Systems.
FPL 2006: 1-6 |
| 13 |  | Yasunori Osana,
Masato Yoshimi,
Akira Funahashi,
Noriko Hiroi,
Yuichiro Shibata,
Naoki Iwanaga,
Hiroaki Kitano,
Hideharu Amano:
Performance Evaluation of an Fpga-Based Biochemical Simulator ReCSip.
FPL 2006: 1-6 |
| 12 |  | Akira Funahashi,
Yukiko Matsuoka,
Akiya Jouraku,
Hiroaki Kitano,
Norihiro Kikuchi:
CellDesigner: a modeling tool for biochemical networks.
Winter Simulation Conference 2006: 1707-1712 |
| 2005 |
| 11 |  | Yasunori Osana,
Yow Iwaoka,
Tomonori Fukushima,
Masato Yoshimi,
Akira Funahashi,
Noriko Hiroi,
Yuichiro Shibata,
Naoki Iwanaga,
Hiroaki Kitano,
Hideharu Amano:
A Framework for ODE-Based Multimodel Biochemical Simulations on an FPGA.
FPL 2005: 574-577 |
| 10 |  | Naoki Iwanaga,
Yuichiro Shibata,
Masato Yoshimi,
Yasunori Osana,
Yow Iwaoka,
Tomonori Fukushima,
Hideharu Amano,
Akira Funahashi,
Noriko Hiroi,
Hiroaki Kitano,
Kiyoshi Oguri:
Efficient Scheduling of Rate Law Functions for ODE-Based Multimodel Biochemical Simulation on an FPGA.
FPL 2005: 666-669 |
| 9 |  | Masato Yoshimi,
Yasunori Osana,
Yow Iwaoka,
Akira Funahashi,
Noriko Hiroi,
Yuichiro Shibata,
Naoki Iwanaga,
Hiroaki Kitano,
Hideharu Amano:
The Design of Scalable Stochastic Biochemical Simulator on FPGA.
FPT 2005: 339-340 |
| 8 |  | Yasunori Osana,
Tomonori Fukushima,
Masato Yoshimi,
Yow Iwaoka,
Yuichiro Shibata,
Hiroaki Kitano,
Akira Funahashi,
Noriko Hiroi,
Hideharu Amano:
An FPGA-Based, Multi-model Simulation Method for Biochemical Systems.
IPDPS 2005 |
| 2002 |
| 7 |  | Akiya Jouraku,
Michihiro Koibuchi,
Hideharu Amano,
Akira Funahashi:
Routing Algorithms Based on 2D Turn Model for Irregular Networks.
ISPAN 2002: 289-294 |
| 2001 |
| 6 |  | Akira Funahashi,
Michihiro Koibuchi,
Akiya Jouraku,
Hideharu Amano:
The impact of output selection function on adaptive routing.
Computers and Their Applications 2001: 241-246 |
| 5 |  | Michihiro Koibuchi,
Akira Funahashi,
Akiya Jouraku,
Hideharu Amano:
L-Turn Routing: An Adaptive Routing in Irregular Networks.
ICPP 2001: 383-392 |
| 4 |  | Michihiro Koibuchi,
Akiya Jouraku,
Akira Funahashi,
Hideharu Amano:
MMLRU Selection Function: An Output Selection Function on Adaptive Routing.
ISCA PDCS 2001: 1-6 |
| 3 |  | Yulu Yang,
Akira Funahashi,
Akiya Jouraku,
Hiroaki Nishi,
Hideharu Amano,
Toshinori Sueyoshi:
Recursive Diagonal Torus: An Interconnection Network for Massively Parallel Computers.
IEEE Trans. Parallel Distrib. Syst. 12(7): 701-715 (2001) |
| 1999 |
| 2 |  | Qin Fan,
Yulu Yang,
Akira Funahashi,
Hideharu Amano:
A Torus Assignment for an Interconnection Network Recursive Diagonal Torus.
ISPAN 1999: 74-79 |
| 1997 |
| 1 |  | Akira Funahashi,
Toshihiro Hanawa,
Hideharu Amano,
Tomohiro Kudoh:
Adaptive Routing on the Recursive Diagonal Torus.
ISHPC 1997: 171-182 |