 | 2011 |
| 50 |  | Jung-Wei Fan,
Carol Friedman:
Deriving a probabilistic syntacto-semantic grammar for biomedicine based on domain-specific terminologies.
Journal of Biomedical Informatics 44(5): 805-814 (2011) |
| 2010 |
| 49 |  | Rave Harpaz,
Krystl Haerian,
Herbert S. Chase,
Carol Friedman:
Mining electronic health records for adverse drug effects using regression based methods.
IHI 2010: 100-107 |
| 48 |  | Xiaoyan Wang,
Herbert S. Chase,
Marianthi Markatou,
George Hripcsak,
Carol Friedman:
Selecting information in electronic health records for knowledge acquisition.
Journal of Biomedical Informatics 43(4): 595-601 (2010) |
| 2009 |
| 47 |  | Carol Friedman:
Discovering Novel Adverse Drug Events Using Natural Language Processing and Mining of the Electronic Health Record.
AIME 2009: 1-5 |
| 46 |  | Lee T. Sam,
Eneida A. Mendonça,
Jianrong Li,
Judith A. Blake,
Carol Friedman,
Yves A. Lussier:
PhenoGO: an integrated resource for the multiscale mining of clinical and biological data.
BMC Bioinformatics 10(S-2): (2009) |
| 45 |  | Xiaoyan Wang,
George Hripcsak,
Carol Friedman:
Characterizing environmental and phenotypic associations using information theory and electronic health records.
BMC Bioinformatics 10(S-9): 13 (2009) |
| 44 |  | Hua Xu,
Peter D. Stetson,
Carol Friedman:
Research Paper: Methods for Building Sense Inventories of Abbreviations in Clinical Notes.
JAMIA 16(1): 103-108 (2009) |
| 43 |  | Xiaoyan Wang,
George Hripcsak,
Marianthi Markatou,
Carol Friedman:
Research Paper: Active Computerized Pharmacovigilance Using Natural Language Processing, Statistics, and Electronic Health Records: A Feasibility Study.
JAMIA 16(3): 328-337 (2009) |
| 42 |  | George Hripcsak,
Nicholas D. Soulakis,
Li Li,
Frances P. Morrison,
Albert M. Lai,
Carol Friedman,
Neil S. Calman,
Farzad Mostashari:
Research Paper: Syndromic Surveillance Using Ambulatory Electronic Health Records.
JAMIA 16(3): 354-361 (2009) |
| 2008 |
| 41 |  | Jung-Wei Fan,
Carol Friedman:
Semantic reclassification of the UMLS concepts.
Bioinformatics 24(17): 1971-1973 (2008) |
| 40 |  | Elizabeth S. Chen,
George Hripcsak,
Hua Xu,
Marianthi Markatou,
Carol Friedman:
Research Paper: Automated Acquisition of Disease-Drug Knowledge from Biomedical and Clinical Documents: An Initial Study.
JAMIA 15(1): 87-98 (2008) |
| 2007 |
| 39 |  | Ying Tao,
Lee T. Sam,
Jianrong Li,
Carol Friedman,
Yves A. Lussier:
Information theory applied to the sparse gene ontology annotation network to predict novel gene function.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 529-538 |
| 38 |  | Jung-Wei Fan,
Hua Xu,
Carol Friedman:
Using Distributional Analysis to Semantically Classify UMLS Concepts.
MedInfo 2007: 519-523 |
| 37 |  | Lee T. Sam,
Yang Liu,
Jianrong Li,
Carol Friedman,
Yves A. Lussier:
Discovery of Protein Interaction Networks Shared by Diseases.
Pacific Symposium on Biocomputing 2007: 76-87 |
| 36 |  | Jung-Wei Fan,
Hua Xu,
Carol Friedman:
Using contextual and lexical features to restructure and validate the classification of biomedical concepts.
BMC Bioinformatics 8: (2007) |
| 35 |  | Hua Xu,
Jung-Wei Fan,
George Hripcsak,
Eneida A. Mendonça,
Marianthi Markatou,
Carol Friedman:
Gene symbol disambiguation using knowledge-based profiles.
Bioinformatics 23(8): 1015-1022 (2007) |
| 34 |  | Jung-Wei Fan,
Carol Friedman:
Research Paper: Semantic Classification of Biomedical Concepts Using Distributional Similarity.
JAMIA 14(4): 467-477 (2007) |
| 33 |  | P. Karina Tulipano,
Ying Tao,
William S. Millar,
Pat Zanzonico,
Katherine Kolbert,
Hua Xu,
Hong Yu,
Lifeng Chen,
Yves A. Lussier,
Carol Friedman:
Natural language processing and visualization in the molecular imaging domain.
Journal of Biomedical Informatics 40(3): 270-281 (2007) |
| 2006 |
| 32 |  | Ying Tao,
Chintan Patel,
Carol Friedman,
Yves A. Lussier:
Issues in Representing Biological and Clinical Phenotypes Using the Formal Models.
KR-MED 2006 |
| 31 |  | Yves A. Lussier,
Tara Borlawsky,
Daniel Rappaport,
Yang Liu,
Carol Friedman:
PhenoGO: Assigning Phenotypic Context to Gene Ontology Annotations with Natural Language Processing.
Pacific Symposium on Biocomputing 2006: 64-75 |
| 30 |  | Hua Xu,
Marianthi Markatou,
Rositsa Dimova,
Hongfang Liu,
Carol Friedman:
Machine learning and word sense disambiguation in the biomedical domain: design and evaluation issues.
BMC Bioinformatics 7: 334 (2006) |
| 29 |  | Carol Friedman,
Tara Borlawsky,
Lyudmila Shagina,
H. Rosie Xing,
Yves A. Lussier:
Bio-Ontology and text: bridging the modeling gap.
Bioinformatics 22(19): 2421-2429 (2006) |
| 28 |  | Michael E. Bales,
Rita Kukafka,
Ann Burkhardt,
Carol Friedman:
Qualitative assessment of the International Classification of Functioning, Disability, and Health with respect to the desiderata for controlled medical vocabularies.
I. J. Medical Informatics 75(5): 384-395 (2006) |
| 27 |  | Hongfang Liu,
Zhang-Zhi Hu,
Manabu Torii,
Cathy H. Wu,
Carol Friedman:
Research Paper: Quantitative Assessment of Dictionary-based Protein Named Entity Tagging.
JAMIA 13(5): 497-507 (2006) |
| 26 |  | Rita Kukafka,
Michael E. Bales,
Ann Burkhardt,
Carol Friedman:
Research Paper: Human and Automated Coding of Rehabilitation Discharge Summaries According to the International Classification of Functioning, Disability, and Health.
JAMIA 13(5): 508-515 (2006) |
| 25 |  | Li Zhou,
Ying Tao,
James J. Cimino,
Elizabeth S. Chen,
Hongfang Liu,
Yves A. Lussier,
George Hripcsak,
Carol Friedman:
Terminology model discovery using natural language processing and visualization techniques.
Journal of Biomedical Informatics: 626-636 (2006) |
| 2005 |
| 24 |  | Lifeng Chen,
Hongfang Liu,
Carol Friedman:
Gene name ambiguity of eukaryotic nomenclatures.
Bioinformatics 21(2): 248-256 (2005) |
| 23 |  | Ying Tao,
Carol Friedman,
Yves A. Lussier:
Visualizing information across multidimensional post-genomic structured and textual databases.
Bioinformatics 21(8): 1659-1667 (2005) |
| 22 |  | Suzanne Bakken,
Sookyung Hyun,
Carol Friedman,
Stephen B. Johnson:
ISO reference terminology models for nursing: Applicability for natural language processing of nursing narratives.
I. J. Medical Informatics 74(7-8): 615-622 (2005) |
| 21 |  | Eneida A. Mendonça,
Janet Haas,
Lyudmila Shagina,
Elaine Larson,
Carol Friedman:
Extracting information on pneumonia in infants using natural language processing of radiology reports.
Journal of Biomedical Informatics 38(4): 314-321 (2005) |
| 2004 |
| 20 |  | Olivia Tuason,
Lifeng Chen,
Hongfang Liu,
Judith A. Blake,
Carol Friedman:
Biological Nomenclatures: A Source of Lexical Knowledge and Ambiguity.
Pacific Symposium on Biocomputing 2004: 238-249 |
| 19 |  | Ivan Iossifov,
Michael Krauthammer,
Carol Friedman,
Vasileios Hatzivassiloglou,
Joel S. Bader,
Kevin P. White,
Andrey Rzhetsky:
Probabilistic inference of molecular networks from noisy data sources.
Bioinformatics 20(8): 1205-1213 (2004) |
| 18 |  | Sophia Ananiadou,
Carol Friedman,
Jun-ichi Tsujii:
Introduction: named entity recognition in biomedicine.
Journal of Biomedical Informatics 37(6): 393-395 (2004) |
| 2003 |
| 17 |  | Lynette Hirschman,
Carol Friedman,
Robin McEntire,
Cathy H. Wu:
Linking Biomedical Language, Information and Knowledge - Session Introduction.
Pacific Symposium on Biocomputing 2003: 388-390 |
| 16 |  | Hongfang Liu,
Carol Friedman:
Mining Terminological Knowledge in Large Biomedical Corpora.
Pacific Symposium on Biocomputing 2003: 415-426 |
| 15 |  | Carol Friedman,
Hongfang Liu,
Lyudmila Shagina:
A vocabulary development and visualization tool based on natural language processing and the mining of textual patient reports.
Journal of Biomedical Informatics 36(3): 189-201 (2003) |
| 2002 |
| 14 |  | Michael Krauthammer,
Pauline Kra,
Ivan Iossifov,
Shawn M. Gomez,
George Hripcsak,
Vasileios Hatzivassiloglou,
Carol Friedman,
Andrey Rzhetsky:
Of truth and pathways: chasing bits of information through myriads of articles.
ISMB 2002: 249-257 |
| 13 |  | Carol Friedman:
Editorial.
Journal of Biomedical Informatics 35(4): 213-214 (2002) |
| 12 |  | Carol Friedman,
Pauline Kra,
Andrey Rzhetsky:
Two biomedical sublanguages: a description based on the theories of Zellig Harris.
Journal of Biomedical Informatics 35(4): 222-235 (2002) |
| 2001 |
| 11 |  | Andrey Rzhetsky,
Michael Krauthammer,
Tomohiro Koike,
Pauline Kra,
Shawn M. Gomez,
Hong Yu,
Pablo Ariel Duboué,
Wubin Weng,
Steven B. Johnson,
Vasileios Hatzivassiloglou,
Carol Friedman:
GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways.
German Conference on Bioinformatics 2001: 2-5 |
| 10 |  | Carol Friedman,
Pauline Kra,
Hong Yu,
Michael Krauthammer,
Andrey Rzhetsky:
GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.
ISMB (Supplement of Bioinformatics) 2001: 74-82 |
| 9 |  | Kathleen McKeown,
Shih-Fu Chang,
James J. Cimino,
Steven Feiner,
Carol Friedman,
Luis Gravano,
Vasileios Hatzivassiloglou,
Steven Johnson,
Desmond A. Jordan,
Judith Klavans,
André Kushniruk,
Vimla L. Patel,
Simone Teufel:
PERSIVAL, a system for personalized search and summarization over multimedia healthcare information.
JCDL 2001: 331-340 |
| 8 |  | Hongfang Liu,
Yves A. Lussier,
Carol Friedman:
Disambiguating Ambiguous Biomedical Terms in Biomedical Narrative Text: An Unsupervised Method.
Journal of Biomedical Informatics 34(4): 249-261 (2001) |
| 2000 |
| 7 |  | Andrey Rzhetsky,
Tomohiro Koike,
Sergey Kalachikov,
Shawn M. Gomez,
Michael Krauthammer,
Sabina H. Kaplan,
Pauline Kra,
James J. Russo,
Carol Friedman:
A knowledge model for analysis and simulation of regulatory networks.
Bioinformatics 16(12): 1120-1128 (2000) |
| 1989 |
| 6 |  | Carol Friedman:
A General Computational Treatment of the Comparative.
ACL 1989: 161-168 |
| 1985 |
| 5 |  | Emile C. Chi,
Carol Friedman,
Naomi Sager,
Margaret S. Lyman:
Processing Free-Text Input to Obtain a Database of Medical Information.
SIGIR 1985: 82-90 |
| 4 |  | Elaine Marsh,
Carol Friedman:
Transporting the Linguistic String Project System from a Medical to a Navy Domain.
ACM Trans. Inf. Syst. 3(2): 121-140 (1985) |
| 3 |  | Naomi Sager,
Emile C. Chi,
Carol Friedman,
Margaret S. Lyman:
Modeling Natural Language Data for Automatic Creation of a Database from Free-Text Input.
IEEE Database Eng. Bull. 8(3): 45-55 (1985) |
| 1983 |
| 2 |  | Ralph Grishman,
Lynette Hirschman,
Carol Friedman:
Isolating Domain Dependencies In Natural Language Interfaces.
ANLP 1983: 46-53 |
| 1982 |
| 1 |  | Ralph Grishman,
Lynette Hirschman,
Carol Friedman:
Natural Language Interfaces Using Limited Semantic Information.
COLING 1982: 89-94 |