 | 2010 |
| 10 |  | Drew H. Bryant,
Mark Moll,
Brian Y. Chen,
Viacheslav Fofanov,
Lydia E. Kavraki:
Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction.
BMC Bioinformatics 11: 242 (2010) |
| 2009 |
| 9 |  | Antonio Martínez-Alcántara,
E. Ballesteros,
Chen Feng,
Mark Rojas,
H. Koshinsky,
Viacheslav Fofanov,
Paul Havlak,
Yuriy Fofanov:
PIQA: pipeline for Illumina G1 genome analyzer data quality assessment.
Bioinformatics 25(18): 2438-2439 (2009) |
| 2008 |
| 8 |  | David M. Kristensen,
R. Matthew Ward,
Andreas Martin Lisewski,
Serkan Erdin,
Brian Y. Chen,
Viacheslav Fofanov,
Marek Kimmel,
Lydia E. Kavraki,
Olivier Lichtarge:
Prediction of enzyme function based on 3D templates of evolutionarily important amino acids.
BMC Bioinformatics 9: (2008) |
| 2007 |
| 7 |  | Aaron Skewes,
Michael Quance,
Catherine Putonti,
Viacheslav Fofanov,
Yuriy Fofanov:
Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes.
BIOCOMP 2007: 760-766 |
| 6 |  | Chris Reed,
Viacheslav Fofanov,
Catherine Putonti,
Sergei Chumakov,
Tom Slezak,
Yuriy Fofanov:
Effect of the mutation rate and background size on the quality of pathogen identification.
Bioinformatics 23(20): 2665-2671 (2007) |
| 5 |  | Brian Y. Chen,
Drew H. Bryant,
Viacheslav Fofanov,
David M. Kristensen,
Amanda E. Cruess,
Marek Kimmel,
Olivier Lichtarge,
Lydia E. Kavraki:
Cavity Scaling: Automated Refinement of Cavity-Aware motifs in protein Function Prediction.
J. Bioinformatics and Computational Biology 5(2a): 353-382 (2007) |
| 4 |  | Brian Y. Chen,
Viacheslav Fofanov,
Drew H. Bryant,
Bradley D. Dodson,
David M. Kristensen,
Andreas Martin Lisewski,
Marek Kimmel,
Olivier Lichtarge,
Lydia E. Kavraki:
The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs.
Journal of Computational Biology 14(6): 791-816 (2007) |
| 2006 |
| 3 |  | Brian Y. Chen,
Viacheslav Fofanov,
Drew H. Bryant,
Bradley D. Dodson,
David M. Kristensen,
Andreas Martin Lisewski,
Marek Kimmel,
Olivier Lichtarge,
Lydia E. Kavraki:
Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction.
RECOMB 2006: 500-515 |
| 2005 |
| 2 |  | Brian Y. Chen,
Viacheslav Fofanov,
David M. Kristensen,
Marek Kimmel,
Olivier Lichtarge,
Lydia E. Kavraki:
Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs.
Pacific Symposium on Biocomputing 2005 |
| 2004 |
| 1 |  | Yuriy Fofanov,
Yi Luo,
Charles Katili,
Jim Wang,
Yuri Belosludtsev,
Thomas Powdrill,
Chetan Belapurkar,
Viacheslav Fofanov,
Tong-Bin Li,
Sergei Chumakov,
B. Montgomery Pettitt:
How independent are the appearances of n-mers in different genomes?
Bioinformatics 20(15): 2421-2428 (2004) |