Thomas E. Ferrin

	2011
18		John H. Morris, Leonard Apeltsin, Aaron M. Newman, Jan Baumbach, Tobias Wittkop, Gang Su, Gary D. Bader, Thomas E. Ferrin: clusterMaker: a multi-algorithm clustering plugin for Cytoscape. BMC Bioinformatics 12: 436 (2011)
17		Leonard Apeltsin, John H. Morris, Patricia C. Babbitt, Thomas E. Ferrin: Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution. Bioinformatics 27(3): 326-333 (2011)
16		Ursula Pieper, Benjamin M. Webb, David T. Barkan, Dina Schneidman-Duhovny, Avner Schlessinger, Hannes Braberg, Zheng Yang, Elaine C. Meng, Eric F. Pettersen, Conrad C. Huang, Ruchira S. Datta, Parthasarathy Sampathkumar, Mallur S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, Stephen K. Burley, Andrej Sali: ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Research 39(Database-Issue): 465-474 (2011)
	2007
15		John H. Morris, Conrad C. Huang, Patricia C. Babbitt, Thomas E. Ferrin: structureViz: linking Cytoscape and UCSF Chimera. Bioinformatics 23(17): 2345-2347 (2007)
	2006
14		Elaine C. Meng, Eric F. Pettersen, Gregory S. Couch, Conrad C. Huang, Thomas E. Ferrin: Tools for integrated sequence-structure analysis with UCSF Chimera. BMC Bioinformatics 7: 339 (2006)
13		Alex S. Nord, Patricia J. Chang, Bruce R. Conklin, Antony V. Cox, Courtney A. Harper, Geoffrey G. Hicks, Conrad C. Huang, Susan J. Johns, Michiko Kawamoto, Songyan Liu, Elaine C. Meng, John H. Morris, Janet Rossant, Patricia Ruiz, William C. Skarnes, Philippe Soriano, William L. Stanford, Doug Stryke, Harald von Melchner, Wolfgang Wurst, Ken-ichi Yamamura, Stephen G. Young, Patricia C. Babbitt, Thomas E. Ferrin: The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse. Nucleic Acids Research 34(Database-Issue): 642-648 (2006)
	2005
12		Thomas E. Ferrin, Conrad C. Huang, Daniel M. Greenblatt, Doug Stryke, Kathleen M. Giacomini, John H. Morris: Enhancing Data Sharing in Collaborative Research Projects with DASH. Pacific Symposium on Biocomputing 2005
11		Scott C.-H. Pegg, Shoshana Brown, Sunil Ojha, Conrad C. Huang, Thomas E. Ferrin, Patricia C. Babbitt: Representing Structure-Function Relationships in Mechanistically Diverse Enzyme Superfamilies. Pacific Symposium on Biocomputing 2005
	2004
10		Eric F. Pettersen, Thomas D. Goddard, Conrad C. Huang, Gregory S. Couch, Daniel M. Greenblatt, Elaine C. Meng, Thomas E. Ferrin: UCSF Chimera - A visualization system for exploratory research and analysis. Journal of Computational Chemistry 25(13): 1605-1612 (2004)
9		Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali: MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Research 32(Database-Issue): 217-222 (2004)
	2003
8		Doug Stryke, Conrad C. Huang, Michiko Kawamoto, Susan J. Johns, Elaine J. Carlson, Joseph A. Deyoung, Maya K. Leabman, Ira Herskowitz, Kathleen M. Giacomini, Thomas E. Ferrin: SNP Analysis and Presentation in the Pharmacogenetics of Membrane Transporters Project. Pacific Symposium on Biocomputing 2003: 535-547
7		Andrew I. Jewett, Conrad C. Huang, Thomas E. Ferrin: MINRMS: an efficient algorithm for determining protein structure similarity using root-mean-squared-distance. Bioinformatics 19(5): 625-634 (2003)
6		Doug Stryke, Michiko Kawamoto, Conrad C. Huang, Susan J. Johns, Leslie A. King, Courtney A. Harper, Elaine C. Meng, Roy E. Lee, Alice Yee, Larry L'Italien, Pao-Tien Chuang, Stephen G. Young, William C. Skarnes, Patricia C. Babbitt, Thomas E. Ferrin: BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Research 31(1): 278-281 (2003)
5		Ranyee A. Chiang, Elaine C. Meng, Conrad C. Huang, Thomas E. Ferrin, Patricia C. Babbitt: The Structure Superposition Database. Nucleic Acids Research 31(1): 505-510 (2003)
	2001
4		Thomas E. Ferrin, Bruce A. Foster, Richard Hughey: High Performance Computing for Computational Biology - Session Introduction. Pacific Symposium on Biocomputing 2001: 238-239
	1999
3		Thomas E. Ferrin, Eileen Kraemer: Molecules to Maps: Tools for Visualization & Interaction - Session Introduction. Pacific Symposium on Biocomputing 1999: 338-340
	1998
2		Eileen Kraemer, Thomas E. Ferrin: Molecules to maps: tools for visualization and interaction in support of computational biology. Bioinformatics 14(9): 764-771 (1998)
	1992
1		Thomas E. Ferrin, Conrad C. Huang, Gregory S. Couch, Eric F. Pettersen, Robert Langridge: The MidasPlus molecular modeling system. CHI 1992: 521-522

Coauthor Index

1	Leonard Apeltsin	[17] [18]
2	Patricia C. Babbitt	[5] [6] [11] [13] [15] [17]
3	Gary D. Bader	[18]
4	David T. Barkan	[16]
5	Jan Baumbach	[18]
6	Hannes Braberg	[9] [16]
7	Shoshana Brown	[11]
8	Stephen K. Burley	[16]
9	Elaine J. Carlson	[8]
10	Patricia J. Chang	[13]
11	Ranyee A. Chiang	[5]
12	Pao-Tien Chuang	[6]
13	Bruce R. Conklin	[13]
14	Gregory S. Couch	[1] [10] [14]
15	Antony V. Cox	[13]
16	Ruchira S. Datta	[16]
17	Fred P. Davis	[9]
18	Joseph A. Deyoung	[8]
19	Narayanan Eswar	[9]
20	András Fiser	[9]
21	Bruce A. Foster	[4]
22	Kathleen M. Giacomini	[8] [12]
23	Thomas D. Goddard	[10]
24	Daniel M. Greenblatt	[9] [10] [12]
25	Courtney A. Harper	[6] [13]
26	Ira Herskowitz	[8]
27	Geoffrey G. Hicks	[13]
28	Conrad C. Huang	[1] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16]
29	Richard Hughey	[4]
30	Andrew I. Jewett	[7]
31	Susan J. Johns	[6] [8] [13]
32	Michiko Kawamoto	[6] [8] [13]
33	Leslie A. King	[6]
34	Eileen Kraemer	[2] [3]
35	Larry L'Italien	[6]
36	Robert Langridge	[1]
37	Maya K. Leabman	[8]
38	Roy E. Lee	[6]
39	Songyan Liu	[13]
40	Mallur S. Madhusudhan	[9] [16]
41	Marc A. Martí-Renom	[9]
42	Harald von Melchner	[13]
43	Elaine C. Meng	[5] [6] [10] [13] [14] [16]
44	Nebojsa Mirkovic	[9]
45	John H. Morris	[12] [13] [15] [17] [18]
46	Aaron M. Newman	[18]
47	Alex S. Nord	[13]
48	Sunil Ojha	[11]
49	Scott C.-H. Pegg	[11]
50	Eric F. Pettersen	[1] [10] [14] [16]
51	Ursula Pieper	[9] [16]
52	Janet Rossant	[13]
53	Andrea Rossi	[9]
54	Patricia Ruiz	[13]
55	Andrej Sali	[9] [16]
56	Parthasarathy Sampathkumar	[16]
57	Avner Schlessinger	[16]
58	Dina Schneidman-Duhovny (Dina Duhovny)	[16]
59	Kimmen Sjölander	[16]
60	William C. Skarnes	[6] [13]
61	Philippe Soriano	[13]
62	William L. Stanford	[13]
63	Doug Stryke	[6] [8] [12] [13]
64	Ashley C. Stuart	[9]
65	Gang Su	[18]
66	Ben M. Webb (Benjamin M. Webb)	[9] [16]
67	Tobias Wittkop	[18]
68	Wolfgang Wurst	[13]
69	Ken-ichi Yamamura	[13]
70	Zheng Yang	[16]
71	Alice Yee	[6]
72	Stephen G. Young	[6] [13]

Colors in the list of coauthors

Last update Sat Feb 11 22:55:45 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page