 | 2012 |
| 13 |  | René Pool,
Jaap Heringa,
Martin Hoefling,
Roland Schulz,
Jeremy C. Smith,
K. Anton Feenstra:
Enabling grand-canonical Monte Carlo: Extending the flexibility of GROMACS through the GromPy python interface module.
Journal of Computational Chemistry 33(12): 1207-1214 (2012) |
| 2010 |
| 12 |  | Bernd W. Brandt,
K. Anton Feenstra,
Jaap Heringa:
Multi-Harmony: detecting functional specificity from sequence alignment.
Nucleic Acids Research 38(Web-Server-Issue): 35-40 (2010) |
| 2009 |
| 11 |  | Nicola Bonzanni,
K. Anton Feenstra,
Wan Fokkink,
Elzbieta Krepska:
What Can Formal Methods Bring to Systems Biology?
FM 2009: 16-22 |
| 10 |  | Walter Pirovano,
Anneke van der Reijden,
K. Anton Feenstra,
Jaap Heringa:
Structure and function analysis of flexible alignment regions in proteins.
BMC Bioinformatics 10(S-13): 0 (2009) |
| 9 |  | Nicola Bonzanni,
Elzbieta Krepska,
K. Anton Feenstra,
Wan Fokkink,
Thilo Kielmann,
Henri E. Bal,
Jaap Heringa:
Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development.
Bioinformatics 25(16): 2049-2056 (2009) |
| 8 |  | Nicola Bonzanni,
Elzbieta Krepska,
K. Anton Feenstra,
Wan Fokkink,
Thilo Kielmann,
Henri E. Bal,
Jaap Heringa:
Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development.
Bioinformatics 25(19): 2624 (2009) |
| 2008 |
| 7 |  | Elzbieta Krepska,
Nicola Bonzanni,
K. Anton Feenstra,
Wan Fokkink,
Thilo Kielmann,
Henri E. Bal,
Jaap Heringa:
Design Issues for Qualitative Modelling of Biological Cells with Petri Nets.
FMSB 2008: 48-62 |
| 6 |  | Walter Pirovano,
K. Anton Feenstra,
Jaap Heringa:
The meaning of alignment: lessons from structural diversity.
BMC Bioinformatics 9: (2008) |
| 5 |  | Kai Ye,
K. Anton Feenstra,
Jaap Heringa,
Adriaan P. IJzerman,
Elena Marchiori:
Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.
Bioinformatics 24(1): 18-25 (2008) |
| 4 |  | Walter Pirovano,
K. Anton Feenstra,
Jaap Heringa:
PRALINETM: a strategy for improved multiple alignment of transmembrane proteins.
Bioinformatics 24(4): 492-497 (2008) |
| 2007 |
| 3 |  | K. Anton Feenstra,
Walter Pirovano,
Klaas Krab,
Jaap Heringa:
Sequence harmony: detecting functional specificity from alignments.
Nucleic Acids Research 35(Web-Server-Issue): 495-498 (2007) |
| 2006 |
| 2 |  | Elena Marchiori,
Walter Pirovano,
Jaap Heringa,
K. Anton Feenstra:
A Feature Selection Algorithm for Detecting Subtype Specific Functional Sites from Protein Sequences for Smad Receptor Binding.
ICMLA 2006: 168-173 |
| 1999 |
| 1 |  | K. Anton Feenstra,
Berk Hess,
Herman J. C. Berendsen:
Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems.
Journal of Computational Chemistry 20(8): 786-798 (1999) |