 | 2010 |
| 14 |  | Kristian Kvilekval,
Dmitry Fedorov,
Boguslaw Obara,
Ambuj K. Singh,
B. S. Manjunath:
Bisque: a platform for bioimage analysis and management.
Bioinformatics 26(4): 544-552 (2010) |
| 13 |  | Tsutomu Ikegami,
Toyokazu Ishida,
Dmitri G. Fedorov,
Kazuo Kitaura,
Yuichi Inadomi,
Hiroaki Umeda,
Mitsuo Yokokawa,
Satoshi Sekiguchi:
Fragment molecular orbital study of the electronic excitations in the photosynthetic reaction center of Blastochloris viridis.
Journal of Computational Chemistry 31(2): 447-454 (2010) |
| 12 |  | Hui Li,
Dmitri G. Fedorov,
Takeshi Nagata,
Kazuo Kitaura,
Jan H. Jensen,
Mark S. Gordon:
Energy gradients in combined fragment molecular orbital and polarizable continuum model (FMO/PCM) calculation.
Journal of Computational Chemistry 31(4): 778-790 (2010) |
| 2009 |
| 11 |  | Elisa Drelie Gelasca,
Boguslaw Obara,
Dmitri G. Fedorov,
Kristian Kvilekval,
B. S. Manjunath:
A biosegmentation benchmark for evaluation of bioimage analysis methods.
BMC Bioinformatics 10: 368 (2009) |
| 2008 |
| 10 |  | Mahito Chiba,
Dmitri G. Fedorov,
Kazuo Kitaura:
Polarizable continuum model with the fragment molecular orbital-based time-dependent density functional theory.
Journal of Computational Chemistry 29(16): 2667-2676 (2008) |
| 2007 |
| 9 |  | Dmitri G. Fedorov,
Kazuo Kitaura:
Pair interaction energy decomposition analysis.
Journal of Computational Chemistry 28(1): 222-237 (2007) |
| 8 |  | Yuto Komeiji,
Toyokazu Ishida,
Dmitri G. Fedorov,
Kazuo Kitaura:
Change in a protein's electronic structure induced by an explicit solvent: An ab initio fragment molecular orbital study of ubiquitin.
Journal of Computational Chemistry 28(10): 1750-1762 (2007) |
| 7 |  | Dmitri G. Fedorov,
Kazuya Ishimura,
Toyokazu Ishida,
Kazuo Kitaura,
Peter Pulay,
Shigeru Nagase:
Accuracy of the three-body fragment molecular orbital method applied to Møller-Plesset perturbation theory.
Journal of Computational Chemistry 28(9): 1476-1484 (2007) |
| 2006 |
| 6 |  | Dmitry Fedorov,
Baris Sumengen,
B. S. Manjunath:
Multi-Focus Imaging using Local Focus Estimation and Mosaicking.
ICIP 2006: 2093-2096 |
| 5 |  | B. S. Manjunath,
Baris Sumengen,
Zhiqiang Bi,
Jiyun Byun,
Motaz A. El Saban,
Dmitri G. Fedorov,
Nath Vu:
Towards automated bioimage analysis: from features to semantics.
ISBI 2006: 255-258 |
| 4 |  | Dmitri G. Fedorov,
Kazuo Kitaura,
Hui Li,
Jan H. Jensen,
Mark S. Gordon:
The polarizable continuum model (PCM) interfaced with the fragment molecular orbital method (FMO).
Journal of Computational Chemistry 27(8): 976-985 (2006) |
| 2005 |
| 3 |  | Tsutomu Ikegami,
Toyokazu Ishida,
Dmitri G. Fedorov,
Kazuo Kitaura,
Yuichi Inadomi,
Hiroaki Umeda,
Mitsuo Yokokawa,
Satoshi Sekiguchi:
Full Electron Calculation Beyond 20, 000 Atoms: Ground Electronic State of Photosynthetic Proteins.
SC 2005: 10 |
| 2 |  | Tadashi Nemoto,
Dmitri G. Fedorov,
Masami Uebayasi,
Kenji Kanazawa,
Kazuo Kitaura,
Yuto Komeiji:
Ab initio fragment molecular orbital (FMO) method applied to analysis of the ligand-protein interaction in a pheromone-binding protein.
Computational Biology and Chemistry 29(6): 434-439 (2005) |
| 2004 |
| 1 |  | Dmitri G. Fedorov,
Ryan M. Olson,
Kazuo Kitaura,
Mark S. Gordon,
Shiro Koseki:
A new hierarchical parallelization scheme: Generalized distributed data interface (GDDI), and an application to the fragment molecular orbital method (FMO).
Journal of Computational Chemistry 25(6): 872-880 (2004) |