Sean R. Eddy

	2012
42		Marco Punta, Penny C. Coggill, Ruth Y. Eberhardt, Jaina Mistry, John G. Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, Robert D. Finn: The Pfam protein families database. Nucleic Acids Research 40(Database-Issue): 290-301 (2012)
	2011
41		Diana L. Kolbe, Sean R. Eddy: Fast filtering for RNA homology search. Bioinformatics 27(22): 3102-3109 (2011)
40		Paul P. Gardner, Jennifer Daub, John G. Tate, Benjamin L. Moore, Isabelle H. Osuch, Sam Griffiths-Jones, Robert D. Finn, Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy, Alex Bateman: Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Research 39(Database-Issue): 141-145 (2011)
39		Robert D. Finn, Jody Clements, Sean R. Eddy: HMMER web server: interactive sequence similarity searching. Nucleic Acids Research 39(Web-Server-Issue): 29-37 (2011)
38		Sean R. Eddy: Accelerated Profile HMM Searches. PLoS Computational Biology 7(10): (2011)
	2010
37		L. Steven Johnson, Sean R. Eddy, Elon Portugaly: Hidden Markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics 11: 431 (2010)
36		Robert D. Finn, Jaina Mistry, John G. Tate, Penny C. Coggill, Andreas Heger, Joanne E. Pollington, O. Luke Gavin, Prasad Gunasekaran, Goran Ceric, Kristoffer Forslund, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman: The Pfam protein families database. Nucleic Acids Research 38(Database-Issue): 211-222 (2010)
	2009
35		Diana L. Kolbe, Sean R. Eddy: Local RNA structure alignment with incomplete sequence. Bioinformatics 25(10): 1236-1243 (2009)
34		Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy: Infernal 1.0: inference of RNA alignments. Bioinformatics 25(10): 1335-1337 (2009)
33		Fred P. Davis, Sean R. Eddy: A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas. Bioinformatics 25(13): 1647-1654 (2009)
32		Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy: Infernal 1.0: inference of RNA alignments. Bioinformatics 25(13): 1713 (2009)
31		Paul P. Gardner, Jennifer Daub, John G. Tate, Eric P. Nawrocki, Diana L. Kolbe, Stinus Lindgreen, Adam C. Wilkinson, Robert D. Finn, Sam Griffiths-Jones, Sean R. Eddy, Alex Bateman: Rfam: updates to the RNA families database. Nucleic Acids Research 37(Database-Issue): 136-140 (2009)
	2008
30		Robert D. Finn, John G. Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: The Pfam protein families database. Nucleic Acids Research 36(Database-Issue): 281-288 (2008)
29		Sean R. Eddy: A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation. PLoS Computational Biology 4(5): (2008)
28		Elena Rivas, Sean R. Eddy: Probabilistic Phylogenetic Inference with Insertions and Deletions. PLoS Computational Biology 4(9): (2008)
	2007
27		Eric P. Nawrocki, Sean R. Eddy: Query-Dependent Banding (QDB) for Faster RNA Similarity Searches. PLoS Computational Biology 3(3): (2007)
	2006
26		Robin D. Dowell, Sean R. Eddy: Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints. BMC Bioinformatics 7: 400 (2006)
25		Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman: Pfam: clans, web tools and services. Nucleic Acids Research 34(Database-Issue): 247-251 (2006)
	2005
24		Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman: Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research 33(Database-Issue): 121-124 (2005)
23		Sean R. Eddy: "Antedisciplinary" Science. PLoS Computational Biology 1(1): (2005)
	2004
22		Robin D. Dowell, Sean R. Eddy: Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction. BMC Bioinformatics 5: 71 (2004)
21		Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy: The Pfam protein families database. Nucleic Acids Research 32(Database-Issue): 138-141 (2004)
	2003
20		Robert J. Klein, Sean R. Eddy: RSEARCH: Finding homologs of single structured RNA sequences. BMC Bioinformatics 4: 44 (2003)
19		Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy: Rfam: an RNA family database. Nucleic Acids Research 31(1): 439-441 (2003)
	2002
18		Christian M. Zmasek, Sean R. Eddy: RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs. BMC Bioinformatics 3: 14 (2002)
17		Sean R. Eddy: A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinformatics 3: 18 (2002)
16		Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 30(1): 276-280 (2002)
	2001
15		Robin D. Dowell, Rodney M. Jokerst, Allen Day, Sean R. Eddy, Lincoln Stein: The Distributed Annotation System. BMC Bioinformatics 2: 7 (2001)
14		Elena Rivas, Sean R. Eddy: Noncoding RNA gene detection using comparative sequence analysis. BMC Bioinformatics 2: 8 (2001)
13		Christian M. Zmasek, Sean R. Eddy: ATV: display and manipulation of annotated phylogenetic. Bioinformatics 17(4): 383-384 (2001)
12		Christian M. Zmasek, Sean R. Eddy: A simple algorithm to infer gene duplication and speciation events on a gene tree. Bioinformatics 17(9): 821-828 (2001)
	2000
11		Elena Rivas, Sean R. Eddy: The language of RNA: a formal grammar that includes pseudoknots. Bioinformatics 16(4): 334-340 (2000)
10		Elena Rivas, Sean R. Eddy: Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs. Bioinformatics 16(7): 583-605 (2000)
9		Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, Erik L. L. Sonnhammer: The Pfam Protein Families Database. Nucleic Acids Research 28(1): 263-266 (2000)
	1999
8		Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn, Erik L. L. Sonnhammer: Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Research 27(1): 260-262 (1999)
	1998
7		Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme J. Mitchison: Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids Cambridge University Press 1998
6		Sean R. Eddy: [Invited Lecture] Genome sequence analysis and profile hidden Markov models. German Conference on Bioinformatics 1998
5		Sean R. Eddy: Profile hidden Markov models. Bioinformatics 14(9): 755-763 (1998)
4		Erik L. L. Sonnhammer, Sean R. Eddy, Ewan Birney, Alex Bateman, Richard Durbin: Pfam: multiple sequence alignments and HMM-profiles of protein domains. Nucleic Acids Research 26(1): 320-322 (1998)
	1995
3		Henry Ellingworth, Sean R. Eddy: RNA structure alignment on a massively parallel computer. HPCN Europe 1995: 502-507
2		Sean R. Eddy: Multiple Alignment Using Hidden Markov Models. ISMB 1995: 114-120
1		Sean R. Eddy, Graeme J. Mitchison, Richard Durbin: Maximum Discrimination Hidden Markov Models of Sequence Consensus. Journal of Computational Biology 2(1): 9-23 (1995)

Coauthor Index

1	Alex Bateman	[4] [8] [9] [16] [19] [21] [24] [25] [30] [31] [36] [40] [42]
2	Ewan Birney	[4] [8] [9] [16]
3	Chris Boursnell	[42]
4	Goran Ceric	[30] [36] [42]
5	Lorenzo Cerutti	[16]
6	Jody Clements	[39] [42]
7	Penny C. Coggill	[30] [36] [42]
8	Lachlan James M. Coin	[21]
9	Jennifer Daub	[31] [40]
10	Fred P. Davis	[33]
11	Allen Day	[15]
12	Robin D. Dowell	[15] [22] [26]
13	Richard Durbin	[1] [4] [7] [8] [9] [16] [21] [25]
14	Ruth Y. Eberhardt	[42]
15	Henry Ellingworth	[3]
16	Laurence Ettwiller	[16]
17	Robert D. Finn	[8] [21] [25] [30] [31] [36] [39] [40] [42]
18	Kristoffer Forslund	[30] [36] [42]
19	Paul P. Gardner	[31] [40]
20	O. Luke Gavin	[36]
21	Sam Griffiths-Jones	[16] [19] [21] [24] [25] [31] [40]
22	Prasad Gunasekaran	[36]
23	Andreas Heger	[36] [42]
24	Volker Hollich	[21] [25]
25	Liisa Holm	[36] [42]
26	Hans-Rudolf Hotz	[30]
27	Kevin L. Howe	[9] [16]
28	L. Steven Johnson	[37]
29	Rodney M. Jokerst	[15]
30	Ajay Khanna	[19] [21] [24] [25]
31	Robert J. Klein	[20]
32	Diana L. Kolbe	[31] [32] [34] [35] [40] [41]
33	Anders Krogh	[7]
34	Timo Lassmann	[25]
35	Stinus Lindgreen	[31]
36	Mhairi Marshall	[16] [19] [21] [24] [25]
37	Jaina Mistry	[25] [30] [36] [42]
38	Graeme J. Mitchison	[1] [7]
39	Benjamin L. Moore	[40]
40	Simon Moxon	[21] [24] [25]
41	Eric P. Nawrocki	[27] [31] [32] [34] [40]
42	Isabelle H. Osuch	[40]
43	Ningze Pang	[42]
44	Joanne E. Pollington	[36]
45	Elon Portugaly	[37]
46	Marco Punta	[42]
47	Elena Rivas	[10] [11] [14] [28]
48	Stephen John Sammut	[30]
49	Benjamin Schuster-Böckler	[25]
50	Erik L. L. Sonnhammer	[4] [8] [9] [16] [21] [25] [30] [36] [42]
51	Lincoln Stein (Lincoln D. Stein)	[15]
52	David J. Studholme	[21]
53	John G. Tate	[30] [31] [36] [40] [42]
54	Adam C. Wilkinson	[31]
55	Corin Yeats	[21]
56	Christian M. Zmasek	[12] [13] [18]

Colors in the list of coauthors

Last update Tue May 29 20:41:18 2012 CET by the DBLP Team — Data released under the ODC-BY 1.0 license — See also our legal information page