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| 2012 | ||
|---|---|---|
| 36 | Alison Callahan, Michel Dumontier: Evaluating Scientific Hypotheses Using the SPARQL Inferencing Notation. ESWC 2012: 647-658 | |
| 35 | Michel Dumontier: Molecular Symmetry and Specialization of Atomic Connectivity by Class-based Reasoning of Chemical Structure. OWLED 2012 | |
| 34 | Marc-Alexandre Nolin, Michel Dumontier, François Belleau, Jacques Corbeil: Building an HIV data mashup using Bio2RDF. Briefings in Bioinformatics 13(1): 98-106 (2012) | |
| 33 | Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos: Towards quantitative measures in applied ontology CoRR abs/1202.3602: (2012) | |
| 2011 | ||
| 32 | Michel Dumontier, Mélanie Courtot: Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED 2011), San Francisco, California, USA, June 5-6, 2011 CEUR-WS.org 2011 | |
| 31 | Leonid L. Chepelev, Dana Klassen, Michel Dumontier: Chemical Hazard Estimation and Method Comparison with OWL-Encoded Toxicity Decision Trees. OWLED 2011 | |
| 30 | Robert Hoehndorf, Colin R. Batchelor, Thomas Bittner, Michel Dumontier, Karen Eilbeck, Rob Knight, Chris Mungall, Jane S. Richardson, Jesse Stombaugh, Eric Westhof, Craig L. Zirbel, Neocles Leontis: The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data. Applied Ontology 6(1): 53-89 (2011) | |
| 29 | Leonid L. Chepelev, Alexandre Riazanov, Alexandre Kouznetsov, Hong Sang Low, Michel Dumontier, Christopher J. O. Baker: Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics. BMC Bioinformatics 12: 303 (2011) | |
| 28 | Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul Schofield, Georgios V. Gkoutos: A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinformatics 27(7): 1001-1008 (2011) | |
| 27 | Matthias Samwald, Holger Stenzhorn, Michel Dumontier, M. Scott Marshall, Joanne Luciano, Klaus-Peter Adlassnig: Towards an interoperable information infrastructure providing decision support for genomic medicine CoRR abs/1109.6626: (2011) | |
| 26 | Alexander Gawronski, Michel Dumontier: MoSuMo: A Semantic Web service to generate electrostatic potentials across solvent excluded protein surfaces and binding pockets. Computers & Graphics 35(4): 823-830 (2011) | |
| 25 | Michel Dumontier: Taking flight with OWL2. Semantic Web 2(2): 67-70 (2011) | |
| 2010 | ||
| 24 | Michel Dumontier, Robert Hoehndorf: Realism for scientific ontologies. FOIS 2010: 387-399 | |
| 23 | Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Heinrich Herre, Dietrich Rebholz-Schuhmann: Relational Patterns in OWL and Their Application to OBO. OWLED 2010 | |
| 22 | Janna Hastings, Michel Dumontier, Duncan Hull, Matthew Horridge, Christoph Steinbeck, Robert Stevens, Ulrike Sattler, Tertia Hörne, Katarina Britz: Representing Chemicals Using OWL, Description Graphs and Rules. OWLED 2010 | |
| 21 | Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Janet Kelso, Dietrich Rebholz-Schuhmann, Heinrich Herre: Relations as patterns: bridging the gap between OBO and OWL. BMC Bioinformatics 11: 441 (2010) | |
| 20 | Michel Dumontier, Leo Ferres, Natalia Villanueva-Rosales: Modeling and querying graphical representations of statistical data. J. Web Sem. 8(2-3): 241-254 (2010) | |
| 19 | Michel Dumontier: Building an effective Semantic Web for health care and the life sciences. Semantic Web 1(1-2): 131-135 (2010) | |
| 2009 | ||
| 18 | James R. Green, Hanan Mahmoud, Michel Dumontier: Modeling tryptic digestion on the Cell BE processor. CCECE 2009: 701-705 | |
| 17 | Alexander De Leon Battista, Michel Dumontier: A Platform for Reasoning with OWL-EL Knowledge Bases in a Peer-to-Peer Environment. OWLED 2009 | |
| 16 | Xueying Chen, Michel Dumontier: Conjunctive Query Answering in Distributed Ontology Systems for Ontologies with Large OWL ABoxes. OWLED 2009 | |
| 15 | Michel Dumontier, Natalia Villanueva-Rosales: Towards pharmacogenomics knowledge discovery with the semantic web. Briefings in Bioinformatics 10(2): 153-163 (2009) | |
| 2008 | ||
| 14 | Mykola Konyk, Alexander De Leon Battista, Michel Dumontier: Chemical Knowledge for the Semantic Web. DILS 2008: 169-176 | |
| 13 | Michel Dumontier, Leo Ferres, Natalia Villanueva-Rosales: Semantic Annotation and Question Answering of Statistical Graphs. MICAI 2008: 100-110 | |
| 12 | Michel Dumontier: Situational Modeling: Defining Molecular Roles in Biochemical Pathways and Reactions. OWLED 2008 | |
| 11 | Huajun Chen, Kei-Hoi Cheung, Michel Dumontier, Eric Prud'hommeaux, Alan Ruttenberg, Susie Stephens, Yimin Wang: Report on semantic web for health care and life sciences workshop. WWW 2008: 1273-1274 | |
| 10 | Natalia Villanueva-Rosales, Michel Dumontier: yOWL: An ontology-driven knowledge base for yeast biologists. Journal of Biomedical Informatics 41(5): 779-789 (2008) | |
| 2007 | ||
| 9 | Leo Ferres, Michel Dumontier, Natalia Villanueva-Rosales: Semantic Query Answering with Time-Series Graphs. EDOCW 2007: 117-124 | |
| 8 | Natalia Villanueva-Rosales, Michel Dumontier: Describing Chemical Functional Groups in OWL-DL for the Classification of Chemical Compounds. OWLED 2007 | |
| 7 | Laurier Boulianne, Michel Dumontier, Warren J. Gross: A stochastic particle-based biological system simulator. SCSC 2007: 794-801 | |
| 6 | Alexander De Leon Battista, Natalia Villanueva-Rosales, Myroslav Palenychka, Michel Dumontier: SMART: A Web-Based, Ontology-Driven, Semantic Web Query Answering Application. Semantic Web Challenge 2007 | |
| 5 | Michel Dumontier, Natalia Villanueva-Rosales: Three-Layer OWL Ontology Design. WoMO 2007 | |
| 2006 | ||
| 4 | Kevin A. Snyder, Howard J. Feldman, Michel Dumontier, John J. Salama, Christopher W. V. Hogue: Domain-based small molecule binding site annotation. BMC Bioinformatics 7: 152 (2006) | |
| 2002 | ||
| 3 | Michel Dumontier, Christopher W. V. Hogue: NBLAST: a cluster variant of BLAST for NxN comparisons. BMC Bioinformatics 3: 13 (2002) | |
| 2 | Katerina Michalickova, Gary D. Bader, Michel Dumontier, Hao Lieu, Doron Betel, Ruth Isserlin, Christopher W. V. Hogue: SeqHound: biological sequence and structure database as a platform for bioinformatics research. BMC Bioinformatics 3: 32 (2002) | |
| 1 | Michel Dumontier, Katerina Michalickova, Christopher W. V. Hogue: Species-specific protein sequence and fold optimizations. BMC Bioinformatics 3: 39 (2002) | |
Colors in the list of coauthors
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