 | 2011 |
| 13 |  | Joel Dudley,
Rong Chen,
Atul J. Butte:
Matching Cancer Genomes to Established Cell Lines for Personalized Oncology.
Pacific Symposium on Biocomputing 2011: 243-252 |
| 12 |  | Jesse M. Engreitz,
Rong Chen,
Alexander A. Morgan,
Joel Dudley,
Rohan Mallelwar,
Atul J. Butte:
ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression.
Bioinformatics 27(23): 3317-3318 (2011) |
| 11 |  | Joel Dudley,
Tarangini Deshpande,
Atul J. Butte:
Exploiting drug-disease relationships for computational drug repositioning.
Briefings in Bioinformatics 12(4): 303-311 (2011) |
| 2010 |
| 10 |  | Jesse M. Engreitz,
Alexander A. Morgan,
Joel Dudley,
Rong Chen,
Rahul Thathoo,
Russ B. Altman,
Atul J. Butte:
Content-based microarray search using differential expression profiles.
BMC Bioinformatics 11: 603 (2010) |
| 9 |  | Silpa Suthram,
Joel Dudley,
Annie P. Chiang,
Rong Chen,
Trevor Hastie,
Atul J. Butte:
Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets.
PLoS Computational Biology 6(2): (2010) |
| 8 |  | Rong Chen,
Tara K. Sigdel,
Li Li,
Neeraja Kambham,
Joel Dudley,
Szu-chuan Hsieh,
R. Bryan Klassen,
Amery Chen,
Tuyen Caohuu,
Alexander A. Morgan,
Hannah A. Valantine,
Kiran K. Khush,
Minnie M. Sarwal,
Atul J. Butte:
Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions.
PLoS Computational Biology 6(9): (2010) |
| 2009 |
| 7 |  | Joel Dudley,
Atul J. Butte:
Identification of Discriminating Biomarkers for Human Disease Using Integrative Network Biology.
Pacific Symposium on Biocomputing 2009: 27-38 |
| 6 |  | Joel Dudley,
Atul J. Butte:
A Quick Guide for Developing Effective Bioinformatics Programming Skills.
PLoS Computational Biology 5(12): (2009) |
| 2008 |
| 5 |  | Joel Dudley,
David P. Chen,
Atul J. Butte:
Using SNOMED CT For Translational Genomics Data Integration.
KR-MED 2008 |
| 4 |  | Joel Dudley,
Atul J. Butte:
Enabling Integrative Genomic Analysis of High Impact Human Diseases Through Text Mining.
Pacific Symposium on Biocomputing 2008: 580-591 |
| 3 |  | Sudhir Kumar,
Masatoshi Nei,
Joel Dudley,
Koichiro Tamura:
MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences.
Briefings in Bioinformatics 9(4): 299-306 (2008) |
| 2007 |
| 2 |  | Sudhir Kumar,
Joel Dudley:
Bioinformatics software for biologists in the genomics era.
Bioinformatics 23(14): 1713-1717 (2007) |
| 2006 |
| 1 |  | S. Blair Hedges,
Joel Dudley,
Sudhir Kumar:
TimeTree: a public knowledge-base of divergence times among organisms.
Bioinformatics 22(23): 2971-2972 (2006) |