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Thomas Down

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DBLP keys2011
22Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLThomas A. Down, Matias Piipari, Tim J. P. Hubbard: Dalliance: interactive genome viewing on the web. Bioinformatics 27(6): 889-890 (2011)
2010
21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMatias Piipari, Thomas A. Down, Tim J. P. Hubbard: Metamotifs - a generative model for building families of nucleotide position weight matrices. BMC Bioinformatics 11: 348 (2010)
20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMatias Piipari, Thomas A. Down, Harpreet Kaur Saini, Anton J. Enright, Tim J. P. Hubbard: iMotifs: an integrated sequence motif visualization and analysis environment. Bioinformatics 26(6): 843-844 (2010)
19Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJing Su, Sarah A. Teichmann, Thomas A. Down: Assessing Computational Methods of Cis-Regulatory Module Prediction. PLoS Computational Biology 6(12): (2010)
2008
18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndrew M. Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas Down, Robert D. Finn, Henning Hermjakob, Tim J. P. Hubbard, Rafael C. Jimenez, Philip Jones, Andreas Kähäri, Eugene Kulesha, José R. Macías, Gabrielle A. Reeves, Andreas Prlic: Integrating biological data - the Distributed Annotation System. BMC Bioinformatics 9(S-8): (2008)
17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMutlu Dogruel, Thomas A. Down, Tim J. P. Hubbard: NestedMICA as an ab initio protein motif discovery tool. BMC Bioinformatics 9: (2008)
16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRichard C. G. Holland, Thomas A. Down, Matthew R. Pocock, Andreas Prlic, David Huen, Keith James, Sylvain Foisy, Andreas Dräger, Andy Yates, Michael Heuer, Mark J. Schreiber: BioJava: an open-source framework for bioinformatics. Bioinformatics 24(18): 2096-2097 (2008)
15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaul Flicek, Bronwen L. Aken, Kathryn Beal, Benoit Ballester, Mario Cáccamo, Yuan Chen, Laura Clarke, Guy Coates, Fiona Cunningham, Tim Cutts, Thomas A. Down, S. C. Dyer, T. Eyre, Stephen Fitzgerald, Julio Fernandez-Banet, Stefan Gräf, Syed Haider, Martin Hammond, Richard C. G. Holland, Kevin L. Howe, Kerstin Howe, Nathan Johnson, Andrew M. Jenkinson, Andreas Kähäri, Damian Keefe, Felix Kokocinski, Eugene Kulesha, Daniel Lawson, Ian Longden, Karine Megy, Patrick Meidl, Bert Overduin, Anne Parker, Bethan Pritchard, Andreas Prlic, S. Rice, Daniel Rios, Michael Schuster, I. Sealy, Guy Slater, Damian Smedley, Giulietta Spudich, S. Trevanion, Albert J. Vilella, Jan Vogel, Simon White, M. Wood, Ewan Birney, Tony Cox, Val Curwen, Richard Durbin, Xosé M. Fernández-Suarez, Javier Herrero, Tim J. P. Hubbard, Arek Kasprzyk, Glenn Proctor, James Smith, Abel Ureta-Vidal, Stephen M. J. Searle: Ensembl 2008. Nucleic Acids Research 36(Database-Issue): 707-714 (2008)
2007
14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndreas Prlic, Thomas A. Down, Eugene Kulesha, Robert D. Finn, Andreas Kähäri, Tim J. P. Hubbard: Integrating sequence and structural biology with DAS. BMC Bioinformatics 8: (2007)
13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTim J. P. Hubbard, Bronwen L. Aken, Kathryn Beal, Benoit Ballester, Mario Cáccamo, Yuan Chen, Laura Clarke, Guy Coates, Fiona Cunningham, Tim Cutts, Thomas Down, S. C. Dyer, Stephen Fitzgerald, Julio Fernandez-Banet, Stefan Gräf, Syed Haider, Martin Hammond, Javier Herrero, Richard C. G. Holland, Kevin L. Howe, Kerstin Howe, Nathan Johnson, Andreas Kähäri, Damian Keefe, Felix Kokocinski, Eugene Kulesha, Daniel Lawson, Ian Longden, Craig Melsopp, Karine Megy, Patrick Meidl, Bert Overduin, Anne Parker, Andreas Prlic, S. Rice, Daniel Rios, Michael Schuster, I. Sealy, Jessica Severin, Guy Slater, Damian Smedley, Giulietta Spudich, S. Trevanion, Albert J. Vilella, Jan Vogel, Simon White, M. Wood, Tony Cox, Val Curwen, Richard Durbin, Xosé M. Fernández-Suarez, Paul Flicek, Arek Kasprzyk, Glenn Proctor, Stephen M. J. Searle, James Smith, Abel Ureta-Vidal, Ewan Birney: Ensembl 2007. Nucleic Acids Research 35(Database-Issue): 610-617 (2007)
12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLThomas A. Down, Casey M. Bergman, Jing Su, Tim J. P. Hubbard: Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster. PLoS Computational Biology 3(1): (2007)
2006
11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndreas Prlic, Ewan Birney, Tony Cox, Thomas A. Down, Robert D. Finn, Stefan Gräf, David K. Jackson, Andreas Kähäri, Eugene Kulesha, Roger Pettett, James Smith, Jim Stalker, Tim J. P. Hubbard: The Distributed Annotation System for Integration of Biological Data. DILS 2006: 195-203
10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLThomas Down, Bernard Leong, Tim J. P. Hubbard: A machine learning strategy to identify candidate binding sites in human protein-coding sequence. BMC Bioinformatics 7: 419 (2006)
9Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEwan Birney, T. Daniel Andrews, Mario Cáccamo, Yuan Chen, Laura Clarke, Guy Coates, Tony Cox, Fiona Cunningham, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, Xosé M. Fernández-Suarez, Paul Flicek, Stefan Gräf, Martin Hammond, Javier Herrero, Kevin L. Howe, Vivek Iyer, K. Jekosch, Andreas Kähäri, Arek Kasprzyk, Damian Keefe, Felix Kokocinski, Eugene Kulesha, D. London, Ian Longden, Craig Melsopp, Patrick Meidl, Bert Overduin, Anne Parker, Glenn Proctor, Andreas Prlic, Mark Rae, Daniel Rios, Seth Redmond, Michael Schuster, I. Sealy, Stephen M. J. Searle, Jessica Severin, Guy Slater, Damian Smedley, James Smith, Arne Stabenau, Jim Stalker, S. Trevanion, Abel Ureta-Vidal, Jan Vogel, Simon White, Cara Woodwark, Tim J. P. Hubbard: Ensembl 2006. Nucleic Acids Research 34(Database-Issue): 556-561 (2006)
2005
8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndreas Prlic, Thomas A. Down, Tim J. P. Hubbard: Adding Some SPICE to DAS. ECCB/JBI 2005: 41
7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPhilip Jones, Nisha Vinod, Thomas Down, Andre Hackmann, Andreas Kähäri, Ernst Kretschmann, Antony F. Quinn, Daniela Wieser, Henning Hermjakob, Rolf Apweiler: Dasty and UniProt DAS: a perfect pair for protein feature visualization. Bioinformatics 21(14): 3198-3199 (2005)
6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTim J. P. Hubbard, D. Andrews, Mario Cáccamo, Graham Cameron, Yuan Chen, Michele E. Clamp, Laura Clarke, Guy Coates, Tony Cox, Fiona Cunningham, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, Xosé M. Fernández-Suarez, James Gilbert, Martin Hammond, Javier Herrero, H. Hotz, Kevin L. Howe, Vivek Iyer, K. Jekosch, Andreas Kähäri, Arek Kasprzyk, Damian Keefe, Stephen Keenan, Felix Kokocinski, D. London, Ian Longden, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Simon C. Potter, Glenn Proctor, Mark Rae, Daniel Rios, Michael Schuster, Stephen M. J. Searle, Jessica Severin, Guy Slater, Damian Smedley, James Smith, William Spooner, Arne Stabenau, Jim Stalker, R. Storey, S. Trevanion, Abel Ureta-Vidal, Jan Vogel, Simon White, Cara Woodwark, Ewan Birney: Ensembl 2005. Nucleic Acids Research 33(Database-Issue): 447-453 (2005)
2004
5Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLThomas A. Down, Tim J. P. Hubbard: What can we learn from noncoding regions of similarity between genomes? BMC Bioinformatics 5: 131 (2004)
4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEwan Birney, T. Daniel Andrews, Paul Bevan, Mario Cáccamo, Graham Cameron, Yuan Chen, Laura Clarke, Guy Coates, Tony Cox, James A. Cuff, Val Curwen, Tim Cutts, Thomas Down, Richard Durbin, Eduardo Eyras, Xosé M. Fernández-Suarez, P. Gane, B. Gibbins, James Gilbert, Martin Hammond, H. Hotz, Vivek Iyer, Andreas Kähäri, K. Jekosch, Arek Kasprzyk, Damian Keefe, Stephen Keenan, Heikki Lehväslaiho, Graham P. McVicker, Craig Melsopp, Patrick Meidl, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Glenn Proctor, Mark Rae, Stephen M. J. Searle, Guy Slater, Damian Smedley, James Smith, William Spooner, Arne Stabenau, Jim Stalker, R. Storey, Abel Ureta-Vidal, Cara Woodwark, Michele E. Clamp, Tim J. P. Hubbard: Ensembl 2004. Nucleic Acids Research 32(Database-Issue): 468-470 (2004)
2003
3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDiego di Bernardo, Thomas Down, Tim J. P. Hubbard: ddbRNA: detection of conserved secondary structures in multiple alignments. Bioinformatics 19(13): 1606-1611 (2003)
2Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMichele E. Clamp, T. Daniel Andrews, Daniel Barker, Paul Bevan, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas Down, Richard Durbin, Eduardo Eyras, James Gilbert, Martin Hammond, Tim J. P. Hubbard, Arek Kasprzyk, Damian Keefe, Heikki Lehväslaiho, Vivek Iyer, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Alastair Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Ewan Birney: Ensembl 2002: accommodating comparative genomics. Nucleic Acids Research 31(1): 38-42 (2003)
2002
1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTim J. P. Hubbard, Daniel Barker, Ewan Birney, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas Down, Richard Durbin, Eduardo Eyras, James Gilbert, Martin Hammond, Lukasz Huminiecki, Arek Kasprzyk, Heikki Lehväslaiho, Philip Lijnzaad, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Matthew R. Pocock, Simon C. Potter, Alastair Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Michele E. Clamp: The Ensembl genome database project. Nucleic Acids Research 30(1): 38-41 (2002)

Coauthor Index

1Bronwen L. Aken [13] [15]
2Mario Albrecht [18]
3D. Andrews [6]
4T. Daniel Andrews [2] [4] [9]
5Rolf Apweiler [7]
6Benoit Ballester [13] [15]
7Daniel Barker [1] [2]
8Kathryn Beal [13] [15]
9Casey M. Bergman [12]
10Diego di Bernardo [3]
11Paul Bevan [2] [4]
12Ewan Birney [1] [2] [4] [6] [9] [11] [13] [15] [18]
13Hagen Blankenburg [18]
14Mario Cáccamo [4] [6] [9] [13] [15]
15Graham Cameron [1] [2] [4] [6]
16Yuan Chen [1] [2] [4] [6] [9] [13] [15]
17Michele E. Clamp [1] [2] [4] [6]
18Laura Clarke [1] [2] [4] [6] [9] [13] [15]
19Guy Coates [4] [6] [9] [13] [15]
20Antony Cox (Tony Cox) [1] [2] [4] [6] [9] [11] [13] [15]
21James A. Cuff [1] [2] [4]
22Fiona Cunningham [6] [9] [13] [15]
23Val Curwen [1] [2] [4] [6] [9] [13] [15]
24Tim Cutts [4] [6] [9] [13] [15]
25Mutlu Dogruel [17]
26Andreas Dräger [16]
27Richard Durbin [1] [2] [4] [6] [9] [13] [15]
28S. C. Dyer [13] [15]
29Anton J. Enright [20]
30Eduardo Eyras [1] [2] [4]
31T. Eyre [15]
32Julio Fernandez-Banet [13] [15]
33Xosé M. Fernández-Suarez [4] [6] [9] [13] [15]
34Robert D. Finn [11] [14] [18]
35Stephen Fitzgerald [13] [15]
36Paul Flicek [9] [13] [15]
37Sylvain Foisy [16]
38P. Gane [4]
39B. Gibbins [4]
40James Gilbert [1] [2] [4] [6]
41Stefan Gräf [9] [11] [13] [15]
42Andre Hackmann [7]
43Syed Haider [13] [15]
44Martin Hammond [1] [2] [4] [6] [9] [13] [15]
45Henning Hermjakob [7] [18]
46Javier Herrero [6] [9] [13] [15]
47Michael Heuer [16]
48Richard C. G. Holland [13] [15] [16]
49H. Hotz [4] [6]
50Kerstin Howe [13] [15]
51Kevin L. Howe [6] [9] [13] [15]
52Tim J. P. Hubbard [1] [2] [3] [4] [5] [6] [8] [9] [10] [11] [12] [13] [14] [15] [17] [18] [20] [21] [22]
53David Huen [16]
54Lukasz Huminiecki [1]
55Vivek Iyer [2] [4] [6] [9]
56David K. Jackson [11]
57Keith James [16]
58K. Jekosch [4] [6] [9]
59Andrew M. Jenkinson [15] [18]
60Rafael C. Jimenez [18]
61Nathan Johnson [13] [15]
62Philip Jones [7] [18]
63Andreas Kähäri [4] [6] [7] [9] [11] [13] [14] [15] [18]
64Arek Kasprzyk [1] [2] [4] [6] [9] [13] [15]
65Damian Keefe [2] [4] [6] [9] [13] [15]
66Stephen Keenan [4] [6]
67Felix Kokocinski [6] [9] [13] [15]
68Ernst Kretschmann [7]
69Eugene Kulesha [9] [11] [13] [14] [15] [18]
70Daniel Lawson [13] [15]
71Heikki Lehväslaiho [1] [2] [4]
72Bernard Leong [10]
73Philip Lijnzaad [1]
74D. London [6] [9]
75Ian Longden [6] [9] [13] [15]
76José R. Macías [18]
77Graham P. McVicker [4] [6]
78Karine Megy [13] [15]
79Patrick Meidl [4] [6] [9] [13] [15]
80Craig Melsopp [1] [2] [4] [6] [9] [13]
81Emmanuel Mongin [1] [2] [4]
82Bert Overduin [9] [13] [15]
83Anne Parker [9] [13] [15]
84Roger Pettett [1] [2] [4] [11]
85Matias Piipari [20] [21] [22]
86Matthew R. Pocock [1] [16]
87Simon C. Potter [1] [2] [4] [6]
88Bethan Pritchard [15]
89Andreas Prlic [8] [9] [11] [13] [14] [15] [16] [18]
90Glenn Proctor [4] [6] [9] [13] [15]
91Antony F. Quinn [7]
92Mark Rae [4] [6] [9]
93Seth Redmond [9]
94Gabrielle A. Reeves [18]
95S. Rice [13] [15]
96Daniel Rios [6] [9] [13] [15]
97Alastair Rust [1] [2]
98Harpreet Kaur Saini [20]
99Esther Schmidt [1] [2]
100Mark J. Schreiber [16]
101Michael Schuster [6] [9] [13] [15]
102I. Sealy [9] [13] [15]
103Stephen M. J. Searle [1] [2] [4] [6] [9] [13] [15]
104Jessica Severin [6] [9] [13]
105Guy Slater [1] [2] [4] [6] [9] [13] [15]
106Damian Smedley [4] [6] [9] [13] [15]
107James Smith [1] [2] [4] [6] [9] [11] [13] [15]
108William Spooner [1] [2] [4] [6]
109Giulietta Spudich [13] [15]
110Arne Stabenau [1] [2] [4] [6] [9]
111Jim Stalker [1] [2] [4] [6] [9] [11]
112R. Storey [4] [6]
113Elia Stupka [1] [2]
114Jing Su [12] [19]
115Sarah A. Teichmann [19]
116Stephen Trevanion (S. Trevanion) [6] [9] [13] [15]
117Abel Ureta-Vidal [1] [2] [4] [6] [9] [13] [15]
118Imre Vastrik [1] [2]
119Albert J. Vilella [13] [15]
120Nisha Vinod [7]
121Jan Vogel [6] [9] [13] [15]
122Simon White [6] [9] [13] [15]
123Daniela Wieser [7]
124M. Wood [13] [15]
125Cara Woodwark [4] [6] [9]
126Andy Yates [16]

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